Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02868 ATGGCTGCTCGAATTCTTTCCTCTCTGCATTATGTCTCTTCTTCTGCTTCAGTTTCCAAACGTTGTTTTGGCCTATACTGTGGTTGGCATAGAAGAATCAGTGGAATTGGTGCTTCTGCTGCTGCTGATGTGGAGCCTAGCATACCACCAGTGCAAATTGATCACAATCAGCTTCTGATTAATGGAGAATTTATGGATGCAGCTTCTGGAAAAACTTTTCCAACCTATGATCCTAGGACAGGAGATTTAATTGCCAATGTTGCTGAAGGTGACAAGGAAGATGTAAATCGTGCTGTCCATGCTGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAAGATGACAGCTTATGAAAGATCACGCATAATTTTAAGGTTTGCTGATTTATTGGAAAAACACAATGATGAAGTTGCAGCAATTGAAACATGGGATAGTGGGAAGCCTTATGAACAGGCTGCAAATGTTGAGATACCTATGGTAGTACGTGTGTTTCGGTATTATGCTGGATGGGCGGATAAAATTCATGGTCTAACAGTTCCAGGTGATGGACCACACCATGTTCAAACCTTGCATGAGCCTATTGGTGTAGCAGGGCAGATTGTTCCTTGGAATTTCCCACTTCTTATTTATTCATGGAAGGTTGCACCTGCATTAGCATGTGGTAATACAGTTGTGTTGAAAACTGCAGAACAGACACCTCTTTCTGCCCTTTATGTGTCAAAGCTATTTCTTGAGGCAGGACTTCCTCCTGGTGTTCTAAATATTATCACTGGCTATGGTCCAACTGCTGGTGCAGCTCTGTGCAGTCATATGGATGTTGACAAGCTTGCTTTCACAGGATCCAGTGGCACTGGTAAGATTGTACTAGGACTATCTGCACAAAGCAATCTGAAGCCAGTAACTCTGGAGTTGGGTGGAAAATCTCCTTTCATTGTGTGCAAGGATGCTGATGTTGATGTGGCTGTTGAGGCTGCACACTCTGCCTTATTCTTTAATCAGGTTTCATGGTCCTATTTTATGTTATTCTATATGAGAAGAGCCATGCATTCTCAGGATTTTTATTTTTTGCACAGTGATCCAATATGGTTCAAGCTGTTTTGTTTTGTCTCTCTGCAGGGTCAATGTTGTTGTGCTGGTTCTCGCACATTTGTTCATGAAAGCATATATGATGAATTTGTGGAAAAGGCTAAGGCCCGTGCCCTTAAACGTGTGGTTGGAGACCCTTTCAAAATTGGGGTTGAGCAAGGTCCTCAGATTGATTCTGCACAATTCGAGAAGATCCTGAAATACATAAGATCAGGCATTGAAGGTGGTGCTACACTTGAATCTGGTGGTCAAAGAGTTGGCTCCAAAGGCTACTACATCCAACCCACTGTTTTCTCAAATGTTCAGGACAACATGTTGATAGCAAAAGATGAGATCTTTGGTCCAGTACAATCTATCTTAAAATTCAAGGATCTAGAGGAGGTGATACAAAGGGCCAATGCAACTTCCTATGGCCTGGCTGCTGGAGTTTTTACTCAGAATATGGACACTGCTAACACCTTGATGCGTGCACTGCGAGTTGGAACAGTATGGATCAACTGCTATGATGTCTTTGATGCAGCAATACCTTTTGGTGGGTATAAGATGAGTGGGCAAGGGAGAGTAAGGGGAATCTACAGTCTTAGCAGCTATCTTCAAGTTAAAGCTGCTGTCACTGCTTTGAAGAATCCAGCATGGCTGTAG 1728 0.43 MAARILSSLHYVSSSASVSKRCFGLYCGWHRRISGIGASAAADVEPSIPPVQIDHNQLLINGEFMDAASGKTFPTYDPRTGDLIANVAEGDKEDVNRAVHAARKAFDEGPWPKMTAYERSRIILRFADLLEKHNDEVAAIETWDSGKPYEQAANVEIPMVVRVFRYYAGWADKIHGLTVPGDGPHHVQTLHEPIGVAGQIVPWNFPLLIYSWKVAPALACGNTVVLKTAEQTPLSALYVSKLFLEAGLPPGVLNIITGYGPTAGAALCSHMDVDKLAFTGSSGTGKIVLGLSAQSNLKPVTLELGGKSPFIVCKDADVDVAVEAAHSALFFNQVSWSYFMLFYMRRAMHSQDFYFLHSDPIWFKLFCFVSLQGQCCCAGSRTFVHESIYDEFVEKAKARALKRVVGDPFKIGVEQGPQIDSAQFEKILKYIRSGIEGGATLESGGQRVGSKGYYIQPTVFSNVQDNMLIAKDEIFGPVQSILKFKDLEEVIQRANATSYGLAAGVFTQNMDTANTLMRALRVGTVWINCYDVFDAAIPFGGYKMSGQGRVRGIYSLSSYLQVKAAVTALKNPAWL. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02868 575 CDD ALDH_F2BC 53 567 - -
Seca10g02868 575 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 534 IPR016163 GO:0016620
Seca10g02868 575 FunFam Mitochondrial aldehyde dehydrogenase 2 361 536 - -
Seca10g02868 575 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 60 316 - -
Seca10g02868 575 Pfam Aldehyde dehydrogenase family 368 564 IPR015590 GO:0016491
Seca10g02868 575 Pfam Aldehyde dehydrogenase family 66 333 IPR015590 GO:0016491
Seca10g02868 575 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 60 563 IPR016162 GO:0016491
Seca10g02868 575 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 302 309 IPR029510 GO:0016491
Seca10g02868 575 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 369 380 IPR016160 GO:0016491
Seca10g02868 575 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 44 333 - -
Seca10g02868 575 SUPERFAMILY ALDH-like 67 528 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02868 Seca-Chr10 37815953 37820001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02868 1 575 Aldehyde Dehydrogenase Gene Family AT3G48000 68.448 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02868 K00128 - gmx:100798892 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02868 10 37815953 37820001 Seca10g02868 10 37815953 37820001 ECH
Seca10g02868 10 37815953 37820001 Seca12g03705 12 94679303 94682860 PCT