Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02857 ATGAGGAAGCTAAAGTTCCATGAGAAGAAGCTTTTGAAGAAGGTCAACTTTTTGGAATGGAAAAGAGAAGGAGGTCACAGAGAGAACCAGATTATGCAGCGCTACCATGTTACTGGTCGGGATGATTACAAAAATGGAAATATGAATAGATATTCAAGTTTAGGCCGGATGGTTCAAAAGTTGGTAAACATATTGAAACAGATGGACCCGAAGGATCCTTTTCGGATTGAGATGACTGATAAGCTTTTGGAAAAGCTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACTCTATGTGAACGCTTAACTGTGTCATCCTTCTGCAGGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACCTGAAAGAGGCTGTCACATATATTGAGCAGGGGCACGTACGAGTTGGTCCAGAGACAGTTACCGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCATTACATGGGTGGATTCGTCCAAGATAAAGAGAAAGGTCCTTCAGTACAATGACAAGTTGGATGACTATGATATAATGAATTAA 564 0.4167 MRKLKFHEKKLLKKVNFLEWKREGGHRENQIMQRYHVTGRDDYKNGNMNRYSSLGRMVQKLVNILKQMDPKDPFRIEMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDIMN. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02857 187 SMART Ribosomal_S4_2 3 111 IPR001912 GO:0019843
Seca10g02857 187 Gene3D - 112 187 IPR036986 GO:0003723
Seca10g02857 187 SUPERFAMILY Alpha-L RNA-binding motif 27 180 - -
Seca10g02857 187 CDD S4 112 180 - -
Seca10g02857 187 FunFam U3 small nucleolar ribonucleoprotein IMP3 112 184 - -
Seca10g02857 187 ProSiteProfiles S4 RNA-binding domain profile. 112 178 - -
Seca10g02857 187 SMART s4_6 112 175 IPR002942 GO:0003723
Seca10g02857 187 Pfam S4 domain 112 158 IPR002942 GO:0003723
Seca10g02857 187 Pfam Ribosomal protein S4/S9 N-terminal domain 3 110 IPR001912 GO:0019843
Seca10g02857 187 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 183 IPR022801 GO:0003735|GO:0015935|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02857 Seca-Chr10 37580909 37585530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02857 68 153 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 33.333 7.93e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02857 K14560 - gmx:100798516 343.199