Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02831 ATGGAGATTCAGCAAAGCGTGAAGCTCACGGTCCACCACCGAAACATACACAAGAAATGGGCTTCACCCAAAGGTGCTAAAGAATCACCAGAGAAATTTTCAGAACCAATCAACACCACTCCGAGGCTGAAATGGAAGAAGCTCTTCTTCCACAAGTCATCCCAAACCACCATCGCTTCAAAACCCAACAAAACCCAAAACCCCCCTGAAGAGTTCCTCTGCCCCATTTCTGGTTCTCTCATGGCAGACCCTGTTATAGTCTCTTCAGGTCACTCCTTCGACCGAACCTCCGTCCAAGCCTGTAAAAATCTCAACTTTACCCCTCAACTCCCCGATGGCACAACCCCTGATTTCTCCACAGTAATCCCCAACCTTGCCCTCAAATCCGCCATTCTCAAATGGTCCCAAACCCAAGAACCCACCTCCATTACCACCCTCCCACCCAATCTCACCACCACAGAGAACCTCATTCGCACGCTAATGGCCTCAAAACCACAACAACCAAACCCAAACGACGCCACAGAGAAAAAAGACCCACCTGTGAGCCTGTTCAACCATGCAGAAACCGAAGTCCCTCTTCGACCAACACACTTGTACTCGAGTTCAGAGGAATCCATAGCCACCGCCACGTCAGCATCAACCCCACCACTTCAACTCTCGACCCGACCCAGTTGCTGCTACTCTTCACCTTCCTCCTCTGAAATCGAACCATCAACCACACCCGAAGAAGAAGAAATCATGGCTAAAATGAGAAACCCTGAAGTGTCCGTGATCGAAGAGGCTCTGGTTTCTCTCAGAAAGCTCACGAGAACAAGAGAGGAAACGAGGGTGCAGCTATGCACCCCTCGGATAATCTCTGCTCTGCGTTCCCTGGTTGTTTCCAAATACGACGCCGTTCAGGTGAACGCACTTGCCTCCGTGGTGAACCTTTCTCTGGAGAAGACGAATAAAGTGAAGATCGTGCGGTCAGGGATCGTTCCACCGTTGATCGAAGTGTTGAAGTGCGGATCCTCTGAGGCGCAGGAACACGCTTCCGGTGCGCTCTTTAGTTTGGCACTCGACGATGATAACAAAACCGCCATTGGGGTTCTCGGTGCTCTATCGCCGTTGCTTCACGCGCTCCGGTCCGAGAGTGAGCGAACTCGCCATGACTCGGCCTTGGCGCTTTACCATTTGTCTTTAGTGAGGAGTAACCGGGCCAAGATGGTTAAGCTCGGGTCGGTTCAGGTTCTATTGGGCATGGTTAGGTCGGGTCATATGACGGGTCGGGTTCTTTTAATATTGGGCAATTTGGGTTCAGGGTCGGATGGGCGGGCTGTAATGTTGGATGCGGGCGCGGTGGAGTGTTTGGTTGAGTTGCTGAGTGGGACCGAGTTGGAGTCCGGGTCGACTCGGGAGAGTTGTGTTGCGGTTTTGTATGCACTGAGTCACGGCGGGTTGAGGTTCAAGGCGGTGGCGAAGGCGGCGGGGGTGGTGGAGGTGTTGCAAAAGGTGGAGAAGATGGGAAGTGAGAGGGCTAAAGAGAAGGTGAGAAGGATATTGGAGATGATGAGGGGCAAGGAGGTGGAGGAGGAGGATGTGGATTGGGAGGAGCTACTTGACTCGGGGTTAGGTTGTCGAACTCGGAGCCGACACGGTAGTGGGTTGGACGAGTCCACTGCTAACTCGGCCGAGTTTTGA 1680 0.528 MEIQQSVKLTVHHRNIHKKWASPKGAKESPEKFSEPINTTPRLKWKKLFFHKSSQTTIASKPNKTQNPPEEFLCPISGSLMADPVIVSSGHSFDRTSVQACKNLNFTPQLPDGTTPDFSTVIPNLALKSAILKWSQTQEPTSITTLPPNLTTTENLIRTLMASKPQQPNPNDATEKKDPPVSLFNHAETEVPLRPTHLYSSSEESIATATSASTPPLQLSTRPSCCYSSPSSSEIEPSTTPEEEEIMAKMRNPEVSVIEEALVSLRKLTRTREETRVQLCTPRIISALRSLVVSKYDAVQVNALASVVNLSLEKTNKVKIVRSGIVPPLIEVLKCGSSEAQEHASGALFSLALDDDNKTAIGVLGALSPLLHALRSESERTRHDSALALYHLSLVRSNRAKMVKLGSVQVLLGMVRSGHMTGRVLLILGNLGSGSDGRAVMLDAGAVECLVELLSGTELESGSTRESCVAVLYALSHGGLRFKAVAKAAGVVEVLQKVEKMGSERAKEKVRRILEMMRGKEVEEEDVDWEELLDSGLGCRTRSRHGSGLDESTANSAEF. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02831 559 MobiDBLite consensus disorder prediction 540 559 - -
Seca10g02831 559 PANTHER U BOX DOMAIN-CONTAINING 56 518 - -
Seca10g02831 559 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
Seca10g02831 559 SMART arm_5 313 353 IPR000225 GO:0005515
Seca10g02831 559 SMART arm_5 434 477 IPR000225 GO:0005515
Seca10g02831 559 SMART arm_5 354 394 IPR000225 GO:0005515
Seca10g02831 559 MobiDBLite consensus disorder prediction 189 244 - -
Seca10g02831 559 Gene3D - 239 516 IPR011989 -
Seca10g02831 559 Pfam U-box domain 69 138 IPR003613 GO:0004842|GO:0016567
Seca10g02831 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 361 IPR000225 GO:0005515
Seca10g02831 559 MobiDBLite consensus disorder prediction 195 237 - -
Seca10g02831 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 147 IPR013083 -
Seca10g02831 559 Pfam Armadillo/beta-catenin-like repeat 354 393 IPR000225 GO:0005515
Seca10g02831 559 Pfam Armadillo/beta-catenin-like repeat 316 352 IPR000225 GO:0005515
Seca10g02831 559 FunFam RING-type E3 ubiquitin transferase 241 517 - -
Seca10g02831 559 SUPERFAMILY ARM repeat 249 517 IPR016024 -
Seca10g02831 559 MobiDBLite consensus disorder prediction 14 37 - -
Seca10g02831 559 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Seca10g02831 559 SUPERFAMILY RING/U-box 65 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02831 Seca-Chr10 37024404 37026083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02831 62 559 U-box Gene Family AT5G40140 58.221 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02831 - - lja:Lj2g3v1020040.1 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02831 10 37024404 37026083 Seca4g03132 4 53658718 53660310 ECH
Seca10g02831 10 37024404 37026083 Seca10g02831 10 37024404 37026083 ECH
Seca10g02831 10 37024404 37026083 Seca2g00704 2 10563025 10567148 PCT