Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02827 ATGGCATCAGGGGGTACAGAAGCTTTCCCAGATTTGGGTAAACACTGCCAACACCGTGATTGCAACCAGCTCGATTTCCTTCCTTTCACCTGCGACGGTTGCAAACAGGTGTTCTGTTTGGATCACAGATCCTACAAGTCCCACGCGTGTCCGAAATCCGACCACAACAGCAGGAAAGTTGTAGTCTGTGAAGCATGTTCCATGTCCATTGAGACCACCGGCCACGTGGGACAAGTCGAGGAGGCAATCTTGGAGAGGCACCACAAGTCTGGGAAGTGTGACCCAAACAAGAAGAAGAAACCCATTTGCCCTGTGAAGCGATGCAAGGAAGTTTTGACTTTTTCTAATAACAGTTCTTGTAAAACATGCCACATGAAGGTGTGCCTCAAGCACCGTTTCCCTGCTGACCATGCTTGTAGCAGAGGAGCTTCAGCTTCCTCCTCCTCATCTTCTGCTAATGGACGGTGGAATAATAGGTTCTTGGCTGCTCTGGCTTCAAGGAATGGACAAGACTGTTCCAAGAGTGCTGGATCTCGTTCTACTTCAACTTCTAGTACTCCTTCTGTTAAAGCTTGTTGA 579 0.4853 MASGGTEAFPDLGKHCQHRDCNQLDFLPFTCDGCKQVFCLDHRSYKSHACPKSDHNSRKVVVCEACSMSIETTGHVGQVEEAILERHHKSGKCDPNKKKKPICPVKRCKEVLTFSNNSSCKTCHMKVCLKHRFPADHACSRGASASSSSSSANGRWNNRFLAALASRNGQDCSKSAGSRSTSTSSTPSVKAC. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02827 192 Gene3D - 2 69 IPR035896 -
Seca10g02827 192 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Seca10g02827 192 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Seca10g02827 192 FunFam AN1-type zinc finger protein 2B isoform X1 6 67 - -
Seca10g02827 192 SUPERFAMILY AN1-like Zinc finger 9 61 IPR035896 -
Seca10g02827 192 Gene3D - 81 157 IPR035896 -
Seca10g02827 192 MobiDBLite consensus disorder prediction 169 192 - -
Seca10g02827 192 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 188 - -
Seca10g02827 192 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Seca10g02827 192 Pfam AN1-like Zinc finger 103 141 IPR000058 GO:0008270
Seca10g02827 192 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Seca10g02827 192 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Seca10g02827 192 SUPERFAMILY AN1-like Zinc finger 95 143 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02827 Seca-Chr10 36952055 36953909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02827 1 172 C2H2 Transcription Factor Family AT3G28210 64.535 1.21e-81 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02827 - - aprc:113867149 328.561