Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02788 ATGAAGAGGGCAAGGGATGATGTTTACTCTGGCTCTGCTTCTCAATTCAAACGCCCCTTTGCTTCCTCGCGTGGTGATTCCTATGGCCAAACCCAAGTCCCTGGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGTGGTGGTGGAGGTGGTGTTGGTGGGGGAGCAACTACTTCCCAGAAACTGACTACCAATGATGCCTTATCCTATCTGAAGGAAGTGAAAGACATGTTTCAGGATCAAAGAGAAAAATATGACATGTTCCTTGAAGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGGCATAATAATTTGATTTTTGGATTTAACACTTTCCTGCCAAAGGGGTATGAGATAACACTTGATGAGGATGAGGCCCCTCCAAAGAAAACTGTTGAATTTGAAGAAGCTATTAGTTTTGTAAACAAGATAAAGAAACGATTCCAAAATGATGAACATGTTTACAAATCATTCCTGGACATTTTGAATATGTACCGCAAAGAGCATAAGGACATTGGTGAAGTTTACAGTGAGGTTGCTACCCTTTTTAAGGACCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATACATCTGCAGCGCCTTCTACACAGCATGCTCCATATGGTCGAAATTCATTGCAGCGCTTTAATGAGCGGAGTTCTGTGACACCCATGATACGGCAAATGCATGTAGACAAGGCACAACGTTATCGACGAGACAGACTTCCTTCTCATGATCGTGATCATAGTGTTGAACACCCTGAGCTTGATGATGACAAATCAATGATGAACATGCATAAGGAGCAGAGGAAACGTGAGAGTAGGGATAGAAGAATTCGTGATCAGGATGAGAGAGAACCTGATCTTGATAACAGCAGGGATTTGAACTCACAACGCTTTCCTGACAAAAAGAAATCTGTAAAGAAGGCTGAAGGTTATGGGTTGGCTTCTGACTTTGCTTCTTATGATGACAAAGATAACTTAAAGAGCATGTACAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGACTACCAAACATTCTTGAAGTGTCTTAATATTTTCAGCAATGGAATAATAAAAAGGAATGATTTACAAAATTTGGTAACTGATTTACTTGGAAAGCATTCTGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATCGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTATCTACTGATGGTCATTTATCAAGATCATCGAAGTTGGAGGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGACAGACACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGTACTCCAAGCTACCGGCTTCTCCCTCCAGATTATCCAATTCCTATAGCCAGTCAACGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCCGTGACTTCAGGAAGTGAGGACTACTCTTTCAAACATATGCGCAGGAATCAATATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTGGAGTCTGTGAGTTCAGCTGCTAAACGTGCAGAAGAATTGTATAACAACATTAATGAAAATAAGATCAGTCCAGAGAGTCTGAACCGTCTTGAAGATCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGTCTTTACGGCGACCATGGTCTTGACGTTATAGACATACTGCGTAAAAACGCAACTCATTCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAGATTTATTTTAAAAATCACTACAAATCACTTGACCACCGTAGTTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGGCTGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGACATTCTTCAGTCTATTGCCGCTGGAAATAAACAGCCTTTAATTCCACATCTGGAATTTGAATATTCTGATGCAGGGATTCATGAAGACCTGTATAAACTTGTTCAGTATTCATGTGAGGAGGTATTCTCAAGTAAAGAATTATTAAATAAAATTATGAGGCTCTGGAGTACATTCTTGGAGCCGATGCTTGGTGTTACCTCCCAATCTCATGCAACAGAGAGGGTAGAGGACAGGAAGGCAGGGCATAATGTTAGCAATTTTGTTGCACCAAATGTAGGAGGTGATGGAAGCCCTCATAGAGATTCTATTTCAATAAATTCAAGGTTACCAAAATCTGACAAGAATGAAGTTGATGGTAGAATAACTGAAGTGAAGAATGTTCACCGGACTAGTGTAGCAACCAATGATAAAGAAAATGGATCTGTTGGTGGTGAACTTGGTTGTAGAGATGATCTGGTAATGGATAAAGGGCAGAAAAATATTGAATGCAGTGATAAAGCCTCTGGGTTTAGTAAACAATTTTCCTCTGATGAACAAGGAGTTAAAAACAATGCTTCTATTACAATTAGAGGAGAAAACAGCCTGAACAGGACCAACTTAGACGTGTCTCCAGGTTGTATCCTTACTCCATCCCGACCTACTGATACTGATGACTCTGTAGCTAAGTCCCAGAGTGTTAATGTACCTTTGATTGAGGGATGTGACATCGCAGCTCCAGTACCAGTGGCCAATGGGGTGCTAGTTGAGAACAGTAAAGTAAAAGGCCATGAAGAATCTTCTGGGCCTTGCAAAATTGAAAAAGAAGAGGGTGAATTATCACCAAATGGTGACTCTGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATGCGCAGTCAATGACCAAGTCAAAGCACAATATTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGCTGTCCAGAGGCTGCTGGTGATAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCGGGTGAAGATGTCTCAGGCAGTGAGTCTGCTGGTGATGAATGCTTCCGGGAAGATCATGAGGAGGAGGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATGTGTGATGCACAAGCCGGAGGAGATGGCTCATCTTTGCCGTTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTAACAAAGCACGTATCAGCAGTTTCATGTGTTGAAGAAGCGAAGGATTCAAGGGTGTTTTATGGAAATGATGATTTCTATGTGCTATTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCAGCAAAAACAAATTCAATGATTGCTGAAATGAAACGGAAAGCAAAAGATGGTAGTTCCTCAGATCATTATTCAAGATTTATGAATGCATTGTACAACTTGCTTGATGGATCTGCCGAGAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGGAACCAGTCTTATGTGTTATTCACATTGGACAAGTTAATATATAAATTGATCAGACAGCTTCAAACTGTTGCAACCGATGAGGTAGACGGCAAGCTTATCCAATTATATGAGTATGAGAAGTCTCGGAAATCTGGGAAATTAAATGATTCAGTATATCATGCAAATACACATGTCATCCTTCATGAGGAGAATATATATCGTTTGCAATGTTCCTCTACCCCCTGTCGACTATCCATCCAGCTCATGGACAATATGAATGAAAAGCCCGAGTTGTTTGCTGTTTCCATTGATCCGAATTTTTCCTTTTATCTGCACAACGATTTTCTGTCTGTCTTTCCTGGCAAAAAGGAACCCCATGGCATTATACTGCAAAGAAACAAACGTAAATATGGAGACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTACTGTAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCATCCAAGATTTCCTATGTTCTTGACACACAAGACTTTTTCTTCCGTCCAAGAAAGAAAAGACGAACATCATCAACGATCACATCTTTGCGATCTCGAAGGGACAGAGAAGAAAGATTCCGGAGATTGTTGCCATCCTCGTAA 4197 0.4067 MKRARDDVYSGSASQFKRPFASSRGDSYGQTQVPGGGGGGGGGGGGGGGGGGGGGGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYGRNSLQRFNERSSVTPMIRQMHVDKAQRYRRDRLPSHDRDHSVEHPELDDDKSMMNMHKEQRKRESRDRRIRDQDEREPDLDNSRDLNSQRFPDKKKSVKKAEGYGLASDFASYDDKDNLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLNIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDGHLSRSSKLEDKDKEQKREMDGAKEKDRHKEKYMGKSIQELDLSDCKRCTPSYRLLPPDYPIPIASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNINENKISPESLNRLEDHFTVLNLRCIERLYGDHGLDVIDILRKNATHSLPVILTRLKQKQEEWSRCRSDFNKVWAEIYFKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDILQSIAAGNKQPLIPHLEFEYSDAGIHEDLYKLVQYSCEEVFSSKELLNKIMRLWSTFLEPMLGVTSQSHATERVEDRKAGHNVSNFVAPNVGGDGSPHRDSISINSRLPKSDKNEVDGRITEVKNVHRTSVATNDKENGSVGGELGCRDDLVMDKGQKNIECSDKASGFSKQFSSDEQGVKNNASITIRGENSLNRTNLDVSPGCILTPSRPTDTDDSVAKSQSVNVPLIEGCDIAAPVPVANGVLVENSKVKGHEESSGPCKIEKEEGELSPNGDSEEDNFVAYGDSNAQSMTKSKHNIERRKYQSRNGEDECCPEAAGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEDIEHDDVDGKAESEGEAEGMCDAQAGGDGSSLPLSERFLSSVKPLTKHVSAVSCVEEAKDSRVFYGNDDFYVLFRLHQILYERILSAKTNSMIAEMKRKAKDGSSSDHYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLIRQLQTVATDEVDGKLIQLYEYEKSRKSGKLNDSVYHANTHVILHEENIYRLQCSSTPCRLSIQLMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILQRNKRKYGDLDELSAICSAMEGVTVINGLECKIACSSSKISYVLDTQDFFFRPRKKRRTSSTITSLRSRRDREERFRRLLPSS. 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02788 1398 MobiDBLite consensus disorder prediction 1047 1061 - -
Seca10g02788 1398 Pfam Sin3 family co-repressor 485 577 IPR013194 -
Seca10g02788 1398 Coils Coil 556 576 - -
Seca10g02788 1398 PANTHER SIN3B-RELATED 65 1259 IPR039774 GO:0003714
Seca10g02788 1398 Pfam Paired amphipathic helix repeat 372 416 IPR003822 GO:0006355
Seca10g02788 1398 Pfam Paired amphipathic helix repeat 88 132 IPR003822 GO:0006355
Seca10g02788 1398 Pfam Paired amphipathic helix repeat 172 216 IPR003822 GO:0006355
Seca10g02788 1398 SUPERFAMILY PAH2 domain 63 134 IPR036600 GO:0006355
Seca10g02788 1398 FunFam Paired amphipathic helix protein SIN3 347 421 - -
Seca10g02788 1398 MobiDBLite consensus disorder prediction 1 63 - -
Seca10g02788 1398 Pfam C-terminal domain of Sin3a protein 1118 1365 IPR031693 -
Seca10g02788 1398 MobiDBLite consensus disorder prediction 436 468 - -
Seca10g02788 1398 SUPERFAMILY PAH2 domain 146 218 IPR036600 GO:0006355
Seca10g02788 1398 MobiDBLite consensus disorder prediction 442 468 - -
Seca10g02788 1398 MobiDBLite consensus disorder prediction 991 1010 - -
Seca10g02788 1398 Gene3D Paired amphipathic helix 148 220 IPR036600 GO:0006355
Seca10g02788 1398 MobiDBLite consensus disorder prediction 219 246 - -
Seca10g02788 1398 ProSiteProfiles PAH domain profile. 65 135 IPR003822 GO:0006355
Seca10g02788 1398 SMART hdac_interact2seq4b 483 583 IPR013194 -
Seca10g02788 1398 MobiDBLite consensus disorder prediction 15 30 - -
Seca10g02788 1398 MobiDBLite consensus disorder prediction 771 810 - -
Seca10g02788 1398 Gene3D Paired amphipathic helix 348 421 IPR036600 GO:0006355
Seca10g02788 1398 MobiDBLite consensus disorder prediction 1011 1031 - -
Seca10g02788 1398 SUPERFAMILY PAH2 domain 353 419 IPR036600 GO:0006355
Seca10g02788 1398 Gene3D Paired amphipathic helix 71 133 IPR036600 GO:0006355
Seca10g02788 1398 MobiDBLite consensus disorder prediction 253 329 - -
Seca10g02788 1398 Coils Coil 444 464 - -
Seca10g02788 1398 MobiDBLite consensus disorder prediction 947 1074 - -
Seca10g02788 1398 FunFam Paired amphipathic helix protein Sin3 71 133 - -
Seca10g02788 1398 FunFam Paired amphipathic helix SIN3-like protein 148 219 - -
Seca10g02788 1398 ProSiteProfiles PAH domain profile. 149 219 IPR003822 GO:0006355
Seca10g02788 1398 MobiDBLite consensus disorder prediction 947 966 - -
Seca10g02788 1398 MobiDBLite consensus disorder prediction 219 329 - -
Seca10g02788 1398 ProSiteProfiles PAH domain profile. 350 419 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02788 Seca-Chr10 36089386 36110105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02788 53 168 WRKY Transcription Factor Family AT4G12020 50.427 2.77e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca10g02788 Sin3a_C 5.1e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02788 K11644 - gmx:100807181 2351.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02788 10 36089386 36110105 Seca10g02788 10 36089386 36110105 ECH