Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02785 ATGGGTGGGGATCAGAACACTCTTTCCATGGTTGAGGAAAAGAAGAAGAAGAAAGAGAAAAATGGCTCTTTTCGTTCCATTTTCATGCATGCTGATGGCCTAGACTGGTTTTTCATGATTTTGGGTTTGTTTGGGGCTATTGGTGATGGCATAGGCACCCCTCTGGTGCTGTATGTCACTAGTGAAATTATGAACAATATTGGCGGTTTTTCTAGCCCAACAAGCAACTCTTTTGTCCATAACATCAATAAGAATGCAATTGTTTTGTTATATTTGGCTTGTGGCTCTTTTGTTGCTTGCTTCCTCGAGGGCTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCCAGGTATTTAAAAGCAGTGCTTAGACAAGAAGTTGCATACTTTGATTTGCATGTCACAAGCACTTCTGAGGTCATCACAAGTGTCTCTAATGACAGCCTTGTAATTCAAGACGCTCTTGGTGAAAAGGTTCCAAATTTTTTGATGAATGCATCAATGTTTATTGGGAGCTACATAGTGGCTTTTGCATTATTATGGAGATTGGCCATTGTGGGGTTCCCTTTTGTGGTTCTACTTGTGATCCCTGGTTTTATGTATGGGAGGACTTTGATGGGGTTGGCTAAAAAAATCAGAGAAGAGTATAATCTAGCTGGTACAATAGCAGAACAAGCAATATCTTCCATCAGAACTGTCTATTCCTTTGTGGGGGAAAGCAAGACCATAGATGCTTTCTCTGATGCTCTACAAGGGTCTGTTAAGTTGGGCTTGAAACAAGGCTTAGCTAAAGGCTTAGCCATAGGAAGCAATGGTGTTGTTTTTGCTATATGGTCTTTCATGTCCTATTATGGTAGCAGAATGGTCATGTACCATGGTGCTAAAGGTGGAACTGTATTTGCAGTTGGAGCATCCATAGCTCTTGGTGGATTAGCTCTAGGTGCTGGTTTATCCAATGTGAAGTACTTCTCAGAAGCAAGTACTGCAGGAGAACGCATAATGGAAGTGATAAAAAGAGTCCCTAAGATTGATTCTGATAATATGGCTGGGGAGGTGCTGGAGACTGTGTCAGGGGAAGTGGAATTTGACCATGTTGAATTTGTGTACCCATCAAGGCCAGACAGTGTGATCCTGAATGATTTTTGTCTAAAGATTCCAGCAGGGAAAACAGTGGCCTTGGTGGGAGGGAGTGGCTCAGGAAAATCTACTGTGATATCACTTTTGCAAAGATTCTATGACCCAATTGGGGGAGAGATATGTCTTGATGGGGTGGCTATTCATAAGTTGCAACTCAAGTGGCTGAGGTCTCAGATGGGTTTGGTTAGTCAAGAGCCTGCTCTGTTTGCAACAAGCATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACAGAGGAAGAGGTTGTGGAAGCTGCAAAAGCTTCCAATGCTCATAATTTTATCTCACAATTACCAGAAGGGTATGATACTCAGGTTGGGGAGAGGGGAGTTCAAATGTCAGGGGGACAAAAACAAAGGATTGCAATTGCACGAGCAATAATAAAAAGACCAAGAATCCTTTTGCTAGATGAAGCAACAAGTGCACTTGATTCTGAATCCGAACGAGTCGTGCAAGAAGCTTTGGACAAAGCCGCAGTGGGACGCACCACCATCATAATCGCTCACCGTTTATCCACCATCCGAAACGCAGATGTCATTGCTGTCGTTCAAAGTGGGAAGGTCATGGAAATGGGATCACACGACAGCCTCATTCAAAACGACAACGGTCTCTACACTTCACTCGTCCGTCTCCAACAAACAGACAAAACCAAAAACGAACAAAACGACACCATCACCACAACCACCCTCTCTCACCCTCACCCTTCGTCTATCTCAAATAGAGATAGCAATGTTCAAAACACAAGCAGTCGTAGACTCTCCCTCGTGAGTCGTTCAAGCTCCGCAAACTCAATGGCTCGAGCTTGTGATGATGTCGCTGAAGAAGCTATTACTGAAGATGATGATAAGAACCAGAACCTGCCTGTTCCTTCGTTCCGAAGATTGCTTGCATTGAACTTACCGGAGTGGAAGCAAGCGTGTTTCGGGTGTTTGAATGCGGTTCTGTTTGGTGCGGTTCAGCCTGTGTATGCATTTGCGATGGGATCGGTGATATCTGTTTATTTTCTGAATGATCATGATGAGATCAAGAAGCAAATCAGGATCTATGCGCTTTGTTTTCTAGGGTTGGCTCTGTTCTCATTGGCGTTTAATATCTTCCAGCATTATTGCTTTGCTTACATGGGAGAATACTTAACTAAAAGGATTAGAGAAAGAATGCTCTCCAAGATACTCACATTTGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACTGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCCAACGTGGTAAGGTCTTTGGTGGGAGATAGAATGGCTCTAGTGGTACAAACTATCTCAGCGGTGGTGATAGCATTTACTATGGGCCTGATTATTGCATGGAGGTTGGCCATTGTTATGATAGCCGTTCAGCCCATTATTATAGTGTGCTTCTACATAAGACGTGTCCTACTTAAGAGTATGTCTAACAAGGCCATCAAGGCCCAAGGTGAAAGTAGTAAGATAGCTGCTGAAGCTGTTTCCAACCTTCGAACCATCACTGCTTTTTCTTCTCAGGACAGAATCCTCAAGATGCTTGAGAAAGCCCAAGAAGGCCCAAGCCGTGAAAGCATTAGACAGTCTTGGTTTGCAGGCATTGGGCTTGCTTGTTCCCAGAGCCTCACGTTTTGTACTTGGGCTTTAGACTTTTGGTATGGTGGTAAACTTATTTTTCATGGGTATATCAGTGCTAAGGCACTGTTTGAGACTTTTATGATCTTGGTGAGCACTGGGAGGGTTATTGCTGATGCTGGTAGTATGACCAATGACCTTGCCAAAGGATCAGATGCTGTGGGCTCAGTGTTTGCAATCTTAGATAGGTACACAAAAATTGAGCCTGATGACTTAGATGGGTACAAGCCTGAAAAGATAACAGGCAAGATAGAACTCCATGATGTTCATTTTGCATACCCAGCAAGGCCTAATGTAATGATCTTCCAAGGCTTCTCAATCAAAATTGATCCAGGCAAATCAACAGCATTGGTGGGGCAAAGTGGGTCTGGTAAATCAACAATCATAGGCTTAATAGAGAGATTTTATGATCCACTTAAAGGGACAGTGACTATAGATGGGAGAGACATAAAATCATATCACTTGAGATCACTGAGGATGCACATTGCACTTGTGAGCCAAGAGCCAACACTGTTTGGTGGGACCATAAGGGAGAACATTGCATATGGAGCATCTAGTAAGATTGATGAAACTGAGATCATAGAGGCAGCAAGGGCAGCCAATGCTCATGATTTCATAGCAAGCCTAAAAGATGGTTATGACACATGGTGTGGGGATAGAGGAGTGCAACTCTCTGGGGGTCAGAAGCAGAGGATTGCAATAGCTAGAGCTATATTGAAGAACCCTGAGGTGTTGCTGCTGGATGAAGCCACCAGTGCCCTTGATAGCCAGTCAGAGAAATTGGTGCAAGATGCTCTAGAAAGAGTTATGGTGGGGAGGACCAGTGTGGTGGTGGCTCATAGGTTGAGCACCATACAGAACTGTGATCTGATTGCTGTGTTGGATAAGGGAAGGGTGGTGGAGAAAGGGACCCACTCATCTTTATTGGGTAAGGGACCAAGTGGTGCTTATTACTCTCTGGTAAGTCTGCAGAGAAGACCAACCAACACTATTGCTTACTCTGCACAAGAAATCAGCTAA 3825 0.4366 MGGDQNTLSMVEEKKKKKEKNGSFRSIFMHADGLDWFFMILGLFGAIGDGIGTPLVLYVTSEIMNNIGGFSSPTSNSFVHNINKNAIVLLYLACGSFVACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDALGEKVPNFLMNASMFIGSYIVAFALLWRLAIVGFPFVVLLVIPGFMYGRTLMGLAKKIREEYNLAGTIAEQAISSIRTVYSFVGESKTIDAFSDALQGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSYYGSRMVMYHGAKGGTVFAVGASIALGGLALGAGLSNVKYFSEASTAGERIMEVIKRVPKIDSDNMAGEVLETVSGEVEFDHVEFVYPSRPDSVILNDFCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIGGEICLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATEEEVVEAAKASNAHNFISQLPEGYDTQVGERGVQMSGGQKQRIAIARAIIKRPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKVMEMGSHDSLIQNDNGLYTSLVRLQQTDKTKNEQNDTITTTTLSHPHPSSISNRDSNVQNTSSRRLSLVSRSSSANSMARACDDVAEEAITEDDDKNQNLPVPSFRRLLALNLPEWKQACFGCLNAVLFGAVQPVYAFAMGSVISVYFLNDHDEIKKQIRIYALCFLGLALFSLAFNIFQHYCFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAICSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLIIAWRLAIVMIAVQPIIIVCFYIRRVLLKSMSNKAIKAQGESSKIAAEAVSNLRTITAFSSQDRILKMLEKAQEGPSRESIRQSWFAGIGLACSQSLTFCTWALDFWYGGKLIFHGYISAKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDLDGYKPEKITGKIELHDVHFAYPARPNVMIFQGFSIKIDPGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVTIDGRDIKSYHLRSLRMHIALVSQEPTLFGGTIRENIAYGASSKIDETEIIEAARAANAHDFIASLKDGYDTWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGRVVEKGTHSSLLGKGPSGAYYSLVSLQRRPTNTIAYSAQEIS. 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02785 1274 Gene3D - 362 634 IPR027417 -
Seca10g02785 1274 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Seca10g02785 1274 SUPERFAMILY ABC transporter transmembrane region 27 348 IPR036640 GO:0005524|GO:0016020
Seca10g02785 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1019 1256 IPR003439 GO:0005524
Seca10g02785 1274 Pfam ABC transporter 1038 1187 IPR003439 GO:0005524
Seca10g02785 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1259 IPR027417 -
Seca10g02785 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 602 IPR027417 -
Seca10g02785 1274 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Seca10g02785 1274 ProSitePatterns ABC transporters family signature. 1159 1173 IPR017871 GO:0005524|GO:0016887
Seca10g02785 1274 Gene3D - 1009 1267 IPR027417 -
Seca10g02785 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g02785 1274 SUPERFAMILY ABC transporter transmembrane region 678 1003 IPR036640 GO:0005524|GO:0016020
Seca10g02785 1274 FunFam ABC transporter B family member 1 26 363 - -
Seca10g02785 1274 PANTHER ABC TRANSPORTER B FAMILY 5 753 IPR039421 -
Seca10g02785 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Seca10g02785 1274 MobiDBLite consensus disorder prediction 603 649 - -
Seca10g02785 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 703 984 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g02785 1274 FunFam ABC transporter B family member 4 354 611 - -
Seca10g02785 1274 Pfam ABC transporter transmembrane region 698 966 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g02785 1274 Pfam ABC transporter transmembrane region 39 306 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g02785 1274 FunFam Putative ABC transporter B family member 8 662 1007 - -
Seca10g02785 1274 CDD ABC_6TM_Pgp_ABCB1_D2_like 686 1002 - -
Seca10g02785 1274 Gene3D ABC transporter type 1, transmembrane domain 88 993 IPR036640 GO:0005524|GO:0016020
Seca10g02785 1274 CDD ABC_MTABC3_MDL1_MDL2 1019 1259 - -
Seca10g02785 1274 FunFam ABC transporter B family member 4 1009 1265 - -
Seca10g02785 1274 Pfam ABC transporter 382 531 IPR003439 GO:0005524
Seca10g02785 1274 SMART AAA_5 391 577 IPR003593 GO:0016887
Seca10g02785 1274 SMART AAA_5 1046 1239 IPR003593 GO:0016887
Seca10g02785 1274 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02785 Seca-Chr10 36027462 36035995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02785 699 1274 Calmodulin-binding Proteins AT2G36910 38.581 3.08e-119 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02785 K05658 - gmx:100807709 2080.45