Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02772 ATGGGAAGACCTCCTTGCTGTGATAAATCCAATGTGAAAAGGGGCCTTTGGACTCCTGAAGAAGATGCTAAAATGCTTGCTTATTTATCCAATCATGGAACTGGAAATTGGACATTGGTTCCAAAGAAAGCAGGTTTAATGCTTTTTTTTCCCTTAAATTTGTTTGCAGGGCTTAACAGGTGTGGTAAGAGCTGCAGGCTAAGATGGACCAACTACCTAAGACCTGATCTCAAGCATGACAATTTTACTCCCCAAGAAGAAGAGCTCATTATCAACCTTCATGGAGCTATAGGAAGCAGATGGTCTTTAATTGCAAGAAGGCTACCTGGGAGAACAGACAATGATGTCAAGAACTACTGGAACACAAAACTGAGGAAGAAGCTTATGAAGATGGGAATTGATCCAGTAACCCATAAGCCAGTGTCACAGGTCCTCTCTGACTTGGGAAGCATTAGTGGCATCCCAAACACTGGCAACCAAATGGGTTTAGTCAACAAGGACTTGATGAGCAACATGCTACCAACCAGAACTGAACCATCTGAAATCCAGCACTCATCAGGAACAACCAATGCAGGTGCCAAGAAGAAGTCAATTGTGGAGCACACACAAGAGGATCAAGTTCACTCATGGGAAGAACAGGTGCATTACCAAGTAATAAACCCAGAGAATGTCCAAAAACATGTCCTTAGTGAAGCTGCATCCTCAAGCTCATCTTCATCTTCCTCTAATCTCACACAATTAAGCTCACCACAGTCCTATTCATGCCAAACTTCTCAGACTCAAATCACCACTCCTTGTTCTTCCTTTGATTGGAGTGAGTTTCTTCACAGTGACCCTTTTATGTGGTCAGAGTTTCAACAGATGCAACAGTGTGATCTGCAGAAGGTTATGTCATCACTGAACCCCTCAGGTCTAATGCAAAGTGAAGTTGAACTTTCCAATAATACCAACAGCAATGACCATGACAAGCAAAGTGCTGCATGTGATGATGGTTCTAGGGATGTTGCTTGTGAAGCAAGCATGGAATATCAAATTAGCAAGCAATGTGAAGAAGGTCATTCATCTTCAGGGAATTCATTTGTGGATGGTATTTTGGACAGGGATAGTGAGATAAGGGCAGCATTCCCTGAACTTTTGGATGGTTCTTTTGATTACTAA 1158 0.4231 MGRPPCCDKSNVKRGLWTPEEDAKMLAYLSNHGTGNWTLVPKKAGLMLFFPLNLFAGLNRCGKSCRLRWTNYLRPDLKHDNFTPQEEELIINLHGAIGSRWSLIARRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISGIPNTGNQMGLVNKDLMSNMLPTRTEPSEIQHSSGTTNAGAKKKSIVEHTQEDQVHSWEEQVHYQVINPENVQKHVLSEAASSSSSSSSSNLTQLSSPQSYSCQTSQTQITTPCSSFDWSEFLHSDPFMWSEFQQMQQCDLQKVMSSLNPSGLMQSEVELSNNTNSNDHDKQSAACDDGSRDVACEASMEYQISKQCEEGHSSSGNSFVDGILDRDSEIRAAFPELLDGSFDY. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02772 385 CDD SANT 81 124 IPR001005 -
Seca10g02772 385 CDD SANT 17 73 IPR001005 -
Seca10g02772 385 MobiDBLite consensus disorder prediction 228 251 - -
Seca10g02772 385 MobiDBLite consensus disorder prediction 177 196 - -
Seca10g02772 385 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Seca10g02772 385 FunFam transcription factor MYB80 81 141 - -
Seca10g02772 385 SMART sant 13 75 IPR001005 -
Seca10g02772 385 SMART sant 78 126 IPR001005 -
Seca10g02772 385 Gene3D - 80 143 - -
Seca10g02772 385 MobiDBLite consensus disorder prediction 177 206 - -
Seca10g02772 385 Gene3D - 7 79 - -
Seca10g02772 385 PANTHER F14D16.11-RELATED 1 385 - -
Seca10g02772 385 ProSiteProfiles Myb-like domain profile. 9 73 IPR001005 -
Seca10g02772 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Seca10g02772 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 73 IPR017930 -
Seca10g02772 385 SUPERFAMILY Homeodomain-like 11 120 IPR009057 -
Seca10g02772 385 Pfam Myb-like DNA-binding domain 81 122 IPR001005 -
Seca10g02772 385 Pfam Myb-like DNA-binding domain 14 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02772 Seca-Chr10 35813853 35815589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02772 1 385 MYB Transcription Factor Family AT3G28470 45.736 1.28e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g02772 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02772 K09422 - gmx:100815077 539.265