Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02749 ATGTCCTCCATTAACCAGGCAGACACTATTTCTATATTTATTTATGAATTTATGAATTTCTCAATGAAAGGAGGAGCTAACAAGGCTTGTGCAGCCTGTAAATACCAAAGAAGAAGATGCTCAAAGGATTGTCCTCTAGCTCCATATTTCCCTGCAGATAAACCCAAAACGTTTAGCAATGCTCATCGTTTATTCGGCGTGGCAAATATAATCAGAATCATGAATCAAGTTGCGCATGATGAGAAAGATGAAGCGATGAAGTCAATTATATTTGAGTCTGATATTCGTGCAAAATATCCACAACACGGTTGTTATGGAGTTATTATGCAGTATCAAGATATGATATGCAAAGCAGCTGAAGAGTTACAATATGTACAATCATTGCTTACTCTTTATAAGGAAAGTAATTATCAAATGCAACATCATCATCTTATGCATGCAAATCAAACATATTTATTGTCTCCTACAATATATAATAATGTTAGTGCTAGTATCATAGATTCAAAGCCTGATTTGACTTCAATGCAAAGATTATCATCAGTACATGGAGAATTGAACATTCCTACTACAAATGCAAGGTCAGTACTCGACATTCCTTTTATAGATGCAAGATCTGAAGAATTGAATGTTGAGATGACTAGTGATGCTATAAATGAAAAATCTAATTTGATGTTGCTATCATGTCATGAAAAAGAGGACAATATTCCTAGTAATACTAATGCAAGATCAGTGGAAATTCCTATAAATGATGCTGCAACTGCTAATGCAAGATTTAATATGAGCTTAATGTCATCTAATGATCATGAAGAGCATGATGCTTCTGCGAGCTGTTTGATCACAAGTTTTAACACAAACGATGATGTTGACACAAAATATGCAAAAATTGATTTAAAGAAATCACAAGAACCGCCGACTTGGAATGAATTAGACATGTTTCAACATGTCAATGAGTTTGTCAACGGAAGCAAGAGTGTATGTGAATCCAGAGTTTCAAATTATGGTATTTATATACATGCTTCATGA 1023 0.3392 MSSINQADTISIFIYEFMNFSMKGGANKACAACKYQRRRCSKDCPLAPYFPADKPKTFSNAHRLFGVANIIRIMNQVAHDEKDEAMKSIIFESDIRAKYPQHGCYGVIMQYQDMICKAAEELQYVQSLLTLYKESNYQMQHHHLMHANQTYLLSPTIYNNVSASIIDSKPDLTSMQRLSSVHGELNIPTTNARSVLDIPFIDARSEELNVEMTSDAINEKSNLMLLSCHEKEDNIPSNTNARSVEIPINDAATANARFNMSLMSSNDHEEHDASASCLITSFNTNDDVDTKYAKIDLKKSQEPPTWNELDMFQHVNEFVNGSKSVCESRVSNYGIYIHAS. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02749 340 ProSiteProfiles LOB domain profile. 28 129 IPR004883 -
Seca10g02749 340 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 27 158 - -
Seca10g02749 340 Pfam Lateral organ boundaries (LOB) domain 29 126 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02749 Seca-Chr10 35444831 35446393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02749 20 133 AS2 family AT3G47870 58.772 3.24e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca10g02749 LOB 2.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02749 - - lang:109346924 170.244