Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02738 ATGGGGTTTGGAAATAATGCAGTTCAGGCAGGGAGTTTGGATGTTGACAAGTCAAAGGGAAGGAAGAAGGTGGATGGTGCAAAGAAGGAGAGAAGATGGTGTTTTAGATTCAGTTTCTTTGGAAGCTGCATACCTTCAAGATCAAAAGTTGATAGCTCCATAAGTGGCGCTAGTACCCATAATGGTGACAATAACAAGTCAGTGAAAATTCAATCAGAGGAAAACAAATCTGGATTTGAAAAAAATACAAAGGAAACAAATGCTCCTCCAGAGTCCTCTACAACAACTAGTAATGCGGAAAGTATCCCTTCCACTCCAAAATTCAGTGAGGAGTTGAAGGTTGCTTCTTGTTTGAGAAAATTCACATTCAATGGGCTTAAGGTGGCAACTAGGAATTTCAAACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTCTTCAAAGGTTGGATTGAGGAGAATGGAACTGCACCTGTGAAACCAGGTACTGGGCTTACAGTTGCAGTCAAGATCCTCAACCACAATGGACATCAGGGTCACAAAGAGTGGCTTGCTGAACTGAACTATCTTGGTGATCTTCTCCATCCTAATCTCGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTACGAGTTTATGCCCCGAGGCAGTTTGGAGAACCACCTCTTTAGAAGATTAATTGTTTTTCTCGTAACAACCATGTTTGATGCAAAAGGGCCCCTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTCGCTTTTCTCCATGAAGAAGCTCAGAGGCCCATAATATATCGTGATTTCAAAACATCTAATATTCTTTTAGATGCGGAATACAATGCAAAGCTTTCTGATTTTGGACTTGCCAAAGATGGACCTGAGGGGGAAAAGACACATGTATCAACAAGAGTTATGGGCACATATGGTTATGCTGCTCCGGAGTATGTCATGACTGGTCAGTTTTGA 1005 0.4159 MGFGNNAVQAGSLDVDKSKGRKKVDGAKKERRWCFRFSFFGSCIPSRSKVDSSISGASTHNGDNNKSVKIQSEENKSGFEKNTKETNAPPESSTTTSNAESIPSTPKFSEELKVASCLRKFTFNGLKVATRNFKPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKILNHNGHQGHKEWLAELNYLGDLLHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRLIVFLVTTMFDAKGPLPLPWSIRMKIALGAAKGLAFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGQF. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02738 334 Gene3D Phosphorylase Kinase; domain 1 117 218 - -
Seca10g02738 334 MobiDBLite consensus disorder prediction 1 28 - -
Seca10g02738 334 PANTHER OS01G0588500 PROTEIN-RELATED 86 333 - -
Seca10g02738 334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Seca10g02738 334 MobiDBLite consensus disorder prediction 47 66 - -
Seca10g02738 334 ProSitePatterns Protein kinases ATP-binding region signature. 139 171 IPR017441 GO:0005524
Seca10g02738 334 SUPERFAMILY Protein kinase-like (PK-like) 106 333 IPR011009 -
Seca10g02738 334 FunFam Serine/threonine-protein kinase BIK1 100 218 - -
Seca10g02738 334 MobiDBLite consensus disorder prediction 67 81 - -
Seca10g02738 334 ProSiteProfiles Protein kinase domain profile. 133 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02738 334 Pfam Protein tyrosine and serine/threonine kinase 137 334 IPR001245 GO:0004672|GO:0006468
Seca10g02738 334 MobiDBLite consensus disorder prediction 47 105 - -
Seca10g02738 334 MobiDBLite consensus disorder prediction 82 105 - -
Seca10g02738 334 Gene3D Transferase(Phosphotransferase) domain 1 219 334 - -
Seca10g02738 334 FunFam Os07g0541700 protein 234 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02738 Seca-Chr10 35257871 35262103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02738 119 334 Glycoside Hydrolase AT3G07070 54.630 2.24e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca10g02738 PK_Tyr_Ser-Thr 7.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02738 - - gmx:100499647 549.28