Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02733 ATGGTAGGAAGTGCGACTAAGGTTACCTTTATCTTGTTGGTAACTTTTGCCATTACCATTCCATGCCTTGAGGCTGGCATTGCTGCGTTCGATGATTTTCTCAAATCTCAAGCTGAGGAAGCTCATAAACTTGCTCTTGCTTCCTACGTGCCAAGCCCTGAAGATATTACGGATGAACTCAATCTACACGTTCATTTGTACGTACCATCAATACCCATCCCTTTTGGTAGGGCATTAAATAGCACAAGGAGAGAACTAAGGTCAAAACGTAAAAGAGGACCATGTGAGGCCTCCAACCCCATTGACAAATGTTGGAGGTGCAAGAAAAACTGGGCCAAACATAGGTTTAGATTGGCCAAATGTGGCAAAGGTTTTGGAAGAAGGGCCACAGGAGGGCTTGGAGGTCCAATCTATGTGGTGACTGATTCATCTGATGATCACATGGTGAACCCTAAACCTGGGACTCTTCGTTTTGGTGTTGTCCAAAAGGGTCCATTGTGGATCATCTTTAAACGCAGCATGGTCATCACATTGAAGAATGAGTTGTTGGTTTCCTCAGACAAGACCATTGATGGTCGTGGAGCCAATGTTATGATTAGGGATGGTGCTGGCATCACCATGCAATTTGTCAATAATGTCATCATCCATGGCCTTCGCATAAAGAACATCAAAGCTAAGCCAGGTGGCCTTATAAGGGACTCTTGGAACCATGTTGGACTAAGAACAAGGAGTGATGGTGATGCCATCTCCATTTTTGGATCCTCAAACATTTGGATTGATCATCTTTCCCTCTCTCAATGTGAGGATGGTCTTGTTGACATTATCCAAGGTTCCACTGCCATCACCGTCTCAAATTGCCACATGACCAAACATAACGATGTGATGTTGTTTGGAGCTAGTGATTCCTACAATGGGGATAAGATTATGCAAGTGACGGTGGCATTCAACCATTTTGGTCAAGGATTGATTCAGAGGATGCCTAGGTGTAGATGGGGTTTTGTGCATGTTTTGAACAATGATTACACTCACTGGATGATGTATGCAATTGGTGGTAGCTCAGGGCCAACAATTCTAAGTCAAGGAAATCGGTTCATTGCACCTAACAATGATGCTGCAAAAGAGATCACACATAGAGACTATGCAACGCCAGAAGTGTGGAAGAATTGGCAATGGACATCAGAGATGGACCTATTCATGAATGGTGCCAAGTTTACTGCATCTGGTGCACCTATTAATAAGCATTCATACAAAAAAGGGTTCATGATGAAACCAAGAGATGGAACCCATGTTAGTAGGTTAACAAGGTATACTGGTGCCCTTCCTTGCAAGGTGGGCAAGCCTTGTTAG 1347 0.4373 MVGSATKVTFILLVTFAITIPCLEAGIAAFDDFLKSQAEEAHKLALASYVPSPEDITDELNLHVHLYVPSIPIPFGRALNSTRRELRSKRKRGPCEASNPIDKCWRCKKNWAKHRFRLAKCGKGFGRRATGGLGGPIYVVTDSSDDHMVNPKPGTLRFGVVQKGPLWIIFKRSMVITLKNELLVSSDKTIDGRGANVMIRDGAGITMQFVNNVIIHGLRIKNIKAKPGGLIRDSWNHVGLRTRSDGDAISIFGSSNIWIDHLSLSQCEDGLVDIIQGSTAITVSNCHMTKHNDVMLFGASDSYNGDKIMQVTVAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAPNNDAAKEITHRDYATPEVWKNWQWTSEMDLFMNGAKFTASGAPINKHSYKKGFMMKPRDGTHVSRLTRYTGALPCKVGKPC. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02733 448 Gene3D - 98 441 IPR012334 -
Seca10g02733 448 PANTHER PECTATE LYASE 18-RELATED 42 446 IPR045032 GO:0030570
Seca10g02733 448 SMART amb_all 173 370 IPR002022 -
Seca10g02733 448 SUPERFAMILY Pectin lyase-like 99 439 IPR011050 -
Seca10g02733 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Seca10g02733 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Seca10g02733 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Seca10g02733 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Seca10g02733 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Seca10g02733 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Seca10g02733 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Seca10g02733 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Seca10g02733 448 Pfam Pectate lyase, N terminus 27 86 IPR007524 GO:0030570
Seca10g02733 448 Pfam Pectate lyase 180 364 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02733 Seca-Chr10 35201378 35203659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02733 12 448 Polysaccharide Lyase AT5G15110 54.526 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02733 K01728 - gmx:100785801 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02733 10 35201378 35203659 Seca10g02733 10 35201378 35203659 ECH