Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02732 ATGATGGCCAATTTTCAGAAGCCTGCCAAAAAAGAACCAAAGAAGGATCTGCCTTCTAAGGCATCTACTTCTAAGAAGAAATCAAAAGATGCTGATGAAGATGGGAAGAAGAAAAAACAGAAGAAGAAAAAGGATCCGAATGCACCCAAAAGAGCATTGTCTGGTTTCATGTTCTTTTCTCAAATGGAAAGAGAGAATCTAAAGAAAACTAATCCGGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAAAAATGGAAAAAGATGTCAGCGGAGGAGAAAGAACCTTATGAGGCAAAAGCCCGTGCTGATAAAAAGCGTTACAAGGATGAGATTAGTGGCTACAAAAATCCACAACCCATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA 402 0.3881 MMANFQKPAKKEPKKDLPSKASTSKKKSKDADEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARADKKRYKDEISGYKNPQPMNIDSGNESDSA. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02732 133 Gene3D High mobility group box domain 32 128 IPR036910 -
Seca10g02732 133 PANTHER HIGH MOBILITY GROUP PROTEIN DSP1 18 119 - -
Seca10g02732 133 FunFam FACT complex subunit SSRP1 33 126 - -
Seca10g02732 133 MobiDBLite consensus disorder prediction 89 114 - -
Seca10g02732 133 MobiDBLite consensus disorder prediction 119 133 - -
Seca10g02732 133 MobiDBLite consensus disorder prediction 8 40 - -
Seca10g02732 133 MobiDBLite consensus disorder prediction 1 57 - -
Seca10g02732 133 Pfam HMG (high mobility group) box 49 117 IPR009071 -
Seca10g02732 133 MobiDBLite consensus disorder prediction 89 133 - -
Seca10g02732 133 SUPERFAMILY HMG-box 36 118 IPR036910 -
Seca10g02732 133 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 49 117 IPR009071 -
Seca10g02732 133 SMART hmgende2 48 118 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02732 Seca-Chr10 35197965 35199442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02732 45 117 ARID Transcription Factor Family AT1G04880 39.726 9.66e-11 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca10g02732 HMG_box 3.7e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02732 K09272 - gmx:100805034 184.496