LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g02724	ATGGAAATGGTGATAAAGAATGAAGACAAGAGAAGCTGGGTGTCCATGGCAGAAGGTGAGTTTCAGGTGGCTCGGTTTGCCAAGAGACGTCGAAGAGAGCCTGCAGAAGCTGCACTAACTTGTGAGGGTAACCAAGGTCAGAAGCAACAGTTGCTGCCACAGAAACAAGTTGATCAAAATTCCACTACCAGCACTACAAAAAGAAGTTCAAGATTTCGGGGTGTCAGCAGACATAGATGGACGGGTCGATTTGAAGCTCACTTATGGGACAAGCTCTCTTGGAACATCACCCAAAAGAAGAAAGGGAAGCAAGAAATGTGTTTTCATGTTCAAACTTTGCCTTTGGAACTGGATTGGAATTGGTTGTTGGGACCAACAGTTTACCTTGGGGCTTACGATGAAGAAGAATCAGCAGCCAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTCACCAATTTTCCTATCTCGGAATACGAAAAACAGATAGAGATCATGCAAACTATGACAAAAGAGGAGTACTTGGCCACTTTAAGGAGAAAGAGTAGTGGCTTTTCAAGAGGTGCATCAAAGTATAGGGGTGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGGATCGGGAGGGTTTTTGGAAACAAATATCTCTACCTTGGTACCTACAGCACCCAAGAGGAAGCTGCTCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGATCCATGCTGTAACCAACTTTGACCTGAGTACTTACATAAGATGGTTAAATCCTTCAGCAGGAAATATCTCAGAAACAAAACTTGAATCAAAGGTAGCACCAGAGTCTCAGACAGTGGCTTCCCAATCTAACTACTCTCAAATAGAGGGGTCCAAATCCTTGGCCCTTTACAGCAGTACTTACAATTCAGATTATCTGAATTCCCCTCAAAAGCATGAAGTCGTTGAAAACAAAACATACCAAGTCTCCAGCACTAAGTCATCTTCTCCGACTGCACTTGGGCTCCTTCTCCGCTCTTCAGTATTTAGAGAATTAGTTGAAAAGAATTTGAACATATCTGGAGATGGAACTGATTGGGAAGACACAAAGGACCAACAGCCACAGACAGCTAGTGATGATGAGTTGGTTGGGATCTTTTATGATGGAACTGGTGATACTGATATCCCATTTCCGTGA	1191	0.4349	MEMVIKNEDKRSWVSMAEGEFQVARFAKRRRREPAEAALTCEGNQGQKQQLLPQKQVDQNSTTSTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQEMCFHVQTLPLELDWNWLLGPTVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISEYEKQIEIMQTMTKEEYLATLRRKSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIRWLNPSAGNISETKLESKVAPESQTVASQSNYSQIEGSKSLALYSSTYNSDYLNSPQKHEVVENKTYQVSSTKSSSPTALGLLLRSSVFRELVEKNLNISGDGTDWEDTKDQQPQTASDDELVGIFYDGTGDTDIPFP.	397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g02724	396	SUPERFAMILY	DNA-binding domain	194	255	IPR016177	GO:0003677
	Seca10g02724	396	SUPERFAMILY	DNA-binding domain	124	161	IPR016177	GO:0003677
	Seca10g02724	396	CDD	AP2	72	161	IPR001471	GO:0003700\|GO:0006355
	Seca10g02724	396	ProSiteProfiles	AP2/ERF domain profile.	71	159	IPR001471	GO:0003700\|GO:0006355
	Seca10g02724	396	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	47	317	-	-
	Seca10g02724	396	Gene3D	AP2/ERF domain	70	161	IPR036955	GO:0003700\|GO:0006355
	Seca10g02724	396	Gene3D	AP2/ERF domain	194	255	IPR036955	GO:0003700\|GO:0006355
	Seca10g02724	396	ProSiteProfiles	AP2/ERF domain profile.	195	253	IPR001471	GO:0003700\|GO:0006355
	Seca10g02724	396	CDD	AP2	194	255	IPR001471	GO:0003700\|GO:0006355
	Seca10g02724	396	MobiDBLite	consensus disorder prediction	34	74	-	-
	Seca10g02724	396	MobiDBLite	consensus disorder prediction	42	70	-	-
	Seca10g02724	396	SMART	rav1_2	195	259	IPR001471	GO:0003700\|GO:0006355
	Seca10g02724	396	SMART	rav1_2	71	165	IPR001471	GO:0003700\|GO:0006355
	Seca10g02724	396	MobiDBLite	consensus disorder prediction	358	379	-	-
	Seca10g02724	396	FunFam	AP2-like ethylene-responsive transcription factor	194	255	-	-
	Seca10g02724	396	Pfam	AP2 domain	194	245	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g02724	Seca-Chr10	35133042	35135379	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g02724	53	307	AP2-EREBP Transcription Factor Family	AT5G57390	52.344	4.48e-80	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Seca10g02724		AP2	8.2e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g02724	-		-	ahf:112716370	537.724