Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02720 ATGGGTGAGGTGAAAGAAGAAAATGAAAGATTGAAGATGACACTAGAGCAAGTTGAAAAGAATTACCAATCTCTTCAACTGCGTTTCTTTGACATCCTTGAGAGAGAATCTTCCAAGAAAGGTGTGGAAGATTCAGGTCCTTCCCCTGATGAAGTGGAAGAAGAACCTAAGCTTGTGTCACTATGTCTTGGAAGAAGTCCAAAGAGGCCTAAAAAGGATGAACCAATTGGTAACTCTAGCAAACCTAAAGAACATGAAGATTTGGATGCCAGCCTTACCCTTGGTTTACACTCCAAAAGCCTGTCTTCAATGGAGCTAGCATCTGATCTGAGCCCCATGAATAGCTCAGAAGAACTAAAAGAAGCTGATGGAGGGGGAACATGTTCAACACATAAATCATTAAGGACCAAAGATGGTGGTGATGATATTTCTGAGCTAACACCTACCAAGAGAGCTAGAGTTTGTGTGAGAGCCAGATGTGATACTCCCACGATGAATGATGGATGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGGGCATACTATCGTTGCACAGTTGCTCCAGCTTGCCCAGTCAAGAAACAGGTACAAAGATGTGCTGAGGACATGTCCATCTTAATAACCACATATGAAGGAACCCACAACCACCCACTTCCAGCTTCAGCCACAGCCATGGCTTCCACTACTTCTGCTGCTGTTTCCATGCTATTGGCAGGTTCTTCAACATCTCAGCATACAGGCCACAGTTCAGCATCTATTGGAAATTCTCCTATAGTTTTCAATGGTATGAAGTTTAGCCCTTTTGATCAATCAAGAGCAACACAGGCTTTCTTACCAACCCCTACCCAACATTTGTTCCCAACAATCACTCTAGACCTGACTTCTACTTCTGCTTCATCCTCCTCATTAACCCAAGCCCTTTGTTTACCTTCAAGCTTTGCTTCAAACTCAAGATTCCCTCCATCAAGTCTAAGCTTTTGCTCCCCAGAACCCAATATCCCAGCATCCTTTTGGGGCAGGGGACTTCCTAGCAATGGCAATAGTACTATGCCTATTGACAAAACTCACATCAGGCCAATTAATCTGGGAAACCAATTTCAAGAACATTTCTACCAACACACTATCAAGAACCAAACTGATTTCAGGAAGGAGTTGGCAGAAACACTAGCCAAAGCAATCAGCACAGACTCAAGTCTTCGCTCTGTAATAGCTGCTGCTGTTTCATCTATAGGGGGACAAGGATCAACAAGTAGAAACCAGGGTGGAGAAGAGATTTTAGGTTCAGGTTTGAGCTTGAAGCTAGGGGAGCATCCTCAAGTTTCTTCTTCCAATCCCTTGAACCAGAATGGGAAAGGATGCTTAACAGGCTATTTCAACAGATCATCATCTTCAAGTTCTCAGGCTGGAAACTTCATGCTTCTTCAACCTCCACGGCCATTTTCTCTCTAA 1470 0.4354 MGEVKEENERLKMTLEQVEKNYQSLQLRFFDILERESSKKGVEDSGPSPDEVEEEPKLVSLCLGRSPKRPKKDEPIGNSSKPKEHEDLDASLTLGLHSKSLSSMELASDLSPMNSSEELKEADGGGTCSTHKSLRTKDGGDDISELTPTKRARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVKKQVQRCAEDMSILITTYEGTHNHPLPASATAMASTTSAAVSMLLAGSSTSQHTGHSSASIGNSPIVFNGMKFSPFDQSRATQAFLPTPTQHLFPTITLDLTSTSASSSSLTQALCLPSSFASNSRFPPSSLSFCSPEPNIPASFWGRGLPSNGNSTMPIDKTHIRPINLGNQFQEHFYQHTIKNQTDFRKELAETLAKAISTDSSLRSVIAAAVSSIGGQGSTSRNQGGEEILGSGLSLKLGEHPQVSSSNPLNQNGKGCLTGYFNRSSSSSSQAGNFMLLQPPRPFSL. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02720 489 ProSiteProfiles WRKY domain profile. 160 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca10g02720 489 MobiDBLite consensus disorder prediction 36 86 - -
Seca10g02720 489 MobiDBLite consensus disorder prediction 103 145 - -
Seca10g02720 489 SUPERFAMILY WRKY DNA-binding domain 158 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca10g02720 489 FunFam probable WRKY transcription factor 31 150 227 - -
Seca10g02720 489 Pfam WRKY DNA -binding domain 166 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca10g02720 489 Gene3D WRKY domain 150 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca10g02720 489 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 426 IPR044810 GO:0003700
Seca10g02720 489 MobiDBLite consensus disorder prediction 36 58 - -
Seca10g02720 489 Coils Coil 1 28 - -
Seca10g02720 489 SMART WRKY_cls 165 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca10g02720 489 MobiDBLite consensus disorder prediction 66 86 - -
Seca10g02720 489 MobiDBLite consensus disorder prediction 470 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02720 Seca-Chr10 34946415 34949877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02720 1 465 WRKY Transcription Factor Family AT5G15130 44.379 1.18e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca10g02720 WRKY 4.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02720 - - gmx:100819296 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02720 10 34946415 34949877 Seca10g02720 10 34946415 34949877 ECH
Seca10g02720 10 34946415 34949877 Seca12g01415 12 14183666 14188888 ECH