Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02717 ATGTTGGTGGTGTTTATTAGATTTGATCTGAAATCTTTTTCCCTTGTAGGAAAGAAACCTATAAGAGATAATGGCAAAGCTCCAGTGGTTGCTGAAGCATCCTCAAGCAACAATAACAATCAAGGAACAAGTGGATCTACTCCCCACCTGATCATGGAACTGCAATATTATTCCCATCTTAGGCAATTCACCTTTCATGAGCTCAATTTGGCAACTAAGAATTTCAAAGCTGGGAATTTTCTTGGTGAGGGAGGCTTTGGTACTGTACATAAAGGATGGATCATTCAGAACGGTTGCTCCCCATCAAGACCTGGAGTAGGGATTCCAGTTGCAGTGAAGACCCTCAACATAGAAGGAAATCAGGGTCATAAAGAGTGGGTGGCTGAAGTGAGCAATCTAGGTGCTCTAGAACACCCCAACCTTGTTAAATTGGTTGGATACTGCATAGAAAGAGATAACAGGGTTTTGGTGTATGAATTTATGCCTAGAGGAAGTTTAGAACACCATCTCTTTAGGAGAGGAGCATTGCCCCTTCCATGGTCTATCAGATTGAAAATTTTGATTGGTGCTGCAAAGGGCCTTACTTTTCTGCATGAGGAAGCTACAAAGCCATTAGTTTATCGCGACTTCAAAACTTCTAACATCCTATTGGATTCGGACTACAGTGCGAAACTTTCTGATTTTGGGTTGGTGAAATATGCCCCAGTGGCTAACTTGACTCATGTATCAACTAGATTGATGGGAACTCAAGGGTATGCAGCCCCTGAGTATGTGATGACAGGGCACTTGAGTTCGAAGAGTGATGTGTATAGCTTTGGAGTGGTATTGCTTGAGGTGATGACAGGGAGAAGGGCGATGGATAAGAAGAGGCCAATAGCGGAGCATCACTTGGTGGAATGGGCAAGGCCTCAAATAAAGCCTGGATCAGGAGCACAATACCACCAAGTGATGGATCCAAATCTTGATGGCCACTACTCAACCAAAGGAGCACGCAGGGCAATGAGGTTGGCCTATCATTGCCTTTCAATAGATCCCAAATCACGACCACTCATGAGTCAGGTCGTTGAGGGACTACACTATGCCTCGCAGTATACTGACTTAGCATGTGCCTCACCGTTTTATCATCACATCATGAAACAAGGGCAAGGTCAAGGTGCCCCTTCTTCTTCCAACTCCAAACCAGCCTCAGCTAATAATATTGCTACCAACAAATATGGACTAATAATTGGGCCATCGGCGGGGAGCACACCAAGTCGCTTTCAAGCCTCTCCGTTGAGTTTTACCCATCCTTTTCCTTCACCCTAA 1305 0.446 MLVVFIRFDLKSFSLVGKKPIRDNGKAPVVAEASSSNNNNQGTSGSTPHLIMELQYYSHLRQFTFHELNLATKNFKAGNFLGEGGFGTVHKGWIIQNGCSPSRPGVGIPVAVKTLNIEGNQGHKEWVAEVSNLGALEHPNLVKLVGYCIERDNRVLVYEFMPRGSLEHHLFRRGALPLPWSIRLKILIGAAKGLTFLHEEATKPLVYRDFKTSNILLDSDYSAKLSDFGLVKYAPVANLTHVSTRLMGTQGYAAPEYVMTGHLSSKSDVYSFGVVLLEVMTGRRAMDKKRPIAEHHLVEWARPQIKPGSGAQYHQVMDPNLDGHYSTKGARRAMRLAYHCLSIDPKSRPLMSQVVEGLHYASQYTDLACASPFYHHIMKQGQGQGAPSSSNSKPASANNIATNKYGLIIGPSAGSTPSRFQASPLSFTHPFPSP. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02717 434 CDD STKc_IRAK 81 358 - -
Seca10g02717 434 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 369 - -
Seca10g02717 434 ProSiteProfiles Protein kinase domain profile. 75 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02717 434 Pfam Protein tyrosine and serine/threonine kinase 77 356 IPR001245 GO:0004672|GO:0006468
Seca10g02717 434 SUPERFAMILY Protein kinase-like (PK-like) 61 374 IPR011009 -
Seca10g02717 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Seca10g02717 434 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Seca10g02717 434 PANTHER OS01G0588500 PROTEIN-RELATED 42 359 - -
Seca10g02717 434 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Seca10g02717 434 Gene3D Transferase(Phosphotransferase) domain 1 161 371 - -
Seca10g02717 434 Gene3D Phosphorylase Kinase; domain 1 55 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02717 Seca-Chr10 34907554 34909202 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02717 12 374 Glycoside Hydrolase AT3G07070 44.262 6.69e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca10g02717 PK_Tyr_Ser-Thr 4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02717 - - tcc:18601446 462.225