Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02715 ATGAATGATATTATCACTCCCTCTTCTAATTCTACCATGGCCTTCCCACCTTCACACACTTTCATCTTTCACCATAATGAAGATCACGACCACCTCCGTTCCACTTCAACCTCTCTCAACACCACTTTCCCCTCTTTCCCACCCCAACAACACCACTTTCTTCAAGGGGGTGGTGGTGCAGGAGGTTCTTTCATGATGAAGAGATCGGTGTCGTTTTCAGGCATAGAGAACAACAACAACAACAACAAATGCGATGAAGTGCATGGAGATGATGACTTGTCAGATGATGGGTCCCAGTTAGGAGAGAAGAAGAAGAGGCTCAGTTTGGAACAGGTCAAGGCCCTTGAGAAAAGCTTTGAACTTGGCAACAAACTTGAGCCAGAGAGGAAAATGCAGCTTGCTAAGGCTTTAGGCCTTCAACCTAGACAGATCGCTATTTGGTTTCAGAACAGGAGAGCAAGGTGGAAAACCAAACACCTTGAGAAGGAATATGAAGTTCTCAAGAAACAGTTTGAAGCTATCAAGGCTGATAATGATACCCTTAAGGCCCAGAACCAGAAACTACACGCAGAGTTACAAACACTAAAAAATAGGGACTGTTGTGAAACTGGAACAATTAGCCTTAAAAAGGAAACTGAGGGTTCTTGGAGCAATGGAAGTGATAACAGCTCAGACATTAACTTGGATCTTTCAAGAACACCAGTTATGAACAGTCCTGTTTCTTCTCAGAATGGTATTAAAAGCCTTCTACCCAATTCCATAAAACCCACCAGCATAACACAGCTCCTCCAATGCTCATCAAGATCAGATCTTCAAGATGAAGGCTTCTGCAACATGTTTCACCACATAGATGAGCAGCAGAATTATTGGCCATGGCCTGAGCAGCACCATTTTCATTGA 900 0.4344 MNDIITPSSNSTMAFPPSHTFIFHHNEDHDHLRSTSTSLNTTFPSFPPQQHHFLQGGGGAGGSFMMKRSVSFSGIENNNNNNKCDEVHGDDDLSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKHLEKEYEVLKKQFEAIKADNDTLKAQNQKLHAELQTLKNRDCCETGTISLKKETEGSWSNGSDNSSDINLDLSRTPVMNSPVSSQNGIKSLLPNSIKPTSITQLLQCSSRSDLQDEGFCNMFHHIDEQQNYWPWPEQHHFH. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02715 299 SMART HOX_1 101 162 IPR001356 GO:0003677
Seca10g02715 299 PRINTS Lambda-repressor HTH signature 138 154 IPR000047 GO:0003677
Seca10g02715 299 PRINTS Lambda-repressor HTH signature 129 138 IPR000047 GO:0003677
Seca10g02715 299 FunFam Homeobox-leucine zipper protein ATHB-13 95 162 - -
Seca10g02715 299 Coils Coil 150 198 - -
Seca10g02715 299 CDD homeodomain 103 159 IPR001356 GO:0003677
Seca10g02715 299 Pfam Homeobox associated leucine zipper 158 198 IPR003106 GO:0006355|GO:0043565
Seca10g02715 299 MobiDBLite consensus disorder prediction 83 99 - -
Seca10g02715 299 ProSitePatterns 'Homeobox' domain signature. 133 156 IPR017970 GO:0000981|GO:0006355
Seca10g02715 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 66 291 IPR045224 GO:0003700
Seca10g02715 299 SUPERFAMILY Homeodomain-like 94 159 IPR009057 -
Seca10g02715 299 ProSiteProfiles 'Homeobox' domain profile. 98 158 IPR001356 GO:0003677
Seca10g02715 299 Pfam Homeodomain 103 156 IPR001356 GO:0003677
Seca10g02715 299 Gene3D - 95 173 - -
Seca10g02715 299 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02715 Seca-Chr10 34832884 34835091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02715 13 294 Homeobox Transcription Factor Family AT5G15150 51.000 1.36e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca10g02715 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02715 K09338 - gmx:100790803 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02715 10 34832884 34835091 Seca10g02715 10 34832884 34835091 ECH
Seca10g02715 10 34832884 34835091 Seca10g02715 10 34832884 34835091 PCT