Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02712 ATGGCGAGCCCTGTTGGTGTTGGTGCTAAGACTGGAGGTAGGAATGTGGGAAAAGATAAAGGTGTCAAAGGTGAAGGTTCATGGTTTTGGATGAAACTCAGGATGTTATTCGCTCGCATGGGTTTGGGGTCCACAACGGAACATCGCTCCTTAGGTGACACTAACAACAACAATAAACAGGATAAGGGAAAGAAACCTATAAGAGATAATGGCAAAGCCCCATTGGTTGCTGAAGCATCCCCAAACAACAACAACAATCCAGGAACAAGTGGATCTACTCCCAACCTGATTATGGAACTACAATATTATTCCCATCTTAGGCAGTTCACCTTTTATGAGCTCAAGTTGGCAACTAAGAATTTCAAAGCTGGGAATTTTCTTGGTGAGGGAGGCTTTGCTACTGTACACAAAGGCTGGATCACTCAGAATTATTGCTCCCCATCAAGACCTGGAATGGGAATTCCAGTTGCAGTAAAGACCCTTAACATAGAAGAAAATCAGGGTCACAAAGAATGGGTGGCTGAAATGAGCAATTTAGGTTCCCTGGAACACCCCAACCTTGCTAAATTGGTTGGATACTACATTGAAGGTGATAACAGGGTTTTGGTGTATGAGTTCATGCCTAGAGGAAGTTTAGAACATCATCTCTTTAGGAGTACGTAA 663 0.4314 MASPVGVGAKTGGRNVGKDKGVKGEGSWFWMKLRMLFARMGLGSTTEHRSLGDTNNNNKQDKGKKPIRDNGKAPLVAEASPNNNNNPGTSGSTPNLIMELQYYSHLRQFTFYELKLATKNFKAGNFLGEGGFATVHKGWITQNYCSPSRPGMGIPVAVKTLNIEENQGHKEWVAEMSNLGSLEHPNLAKLVGYYIEGDNRVLVYEFMPRGSLEHHLFRST. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02712 220 ProSiteProfiles Protein kinase domain profile. 121 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02712 220 MobiDBLite consensus disorder prediction 54 71 - -
Seca10g02712 220 Pfam Protein tyrosine and serine/threonine kinase 123 218 IPR001245 GO:0004672|GO:0006468
Seca10g02712 220 MobiDBLite consensus disorder prediction 46 92 - -
Seca10g02712 220 Gene3D Phosphorylase Kinase; domain 1 101 206 - -
Seca10g02712 220 PANTHER OS01G0588500 PROTEIN-RELATED 67 218 - -
Seca10g02712 220 SUPERFAMILY Protein kinase-like (PK-like) 100 218 IPR011009 -
Seca10g02712 220 MobiDBLite consensus disorder prediction 77 92 - -
Seca10g02712 220 FunFam Serine/threonine-protein kinase BIK1 89 206 - -
Seca10g02712 220 ProSitePatterns Protein kinases ATP-binding region signature. 127 159 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02712 Seca-Chr10 34798590 34799586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02712 107 220 Glycoside Hydrolase AT3G07070 44.737 1.57e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca10g02712 PK_Tyr_Ser-Thr 2.9e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02712 - - thj:104802416 189.504