LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g02708	ATGTCTAGCCGAAGGTCCAGGCAACAATCTGGTTCTACAAGAATCTCCGATGATCAAATCATCGAACTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGAGATAGGCGTTCTGACAAGGTATCAGCATCTAAGGTCCTACAAGAGACCTGTAATTACATTAGAAACTTACACAGAGAGGTGGATGATTTAAGTGAACGTTTGTCTCAGTTGTTGGCCACTATTGATGCTGATAGTCCAGAAGCTGCTATCATCAGGAGCCTAATTAACCAATAA	279	0.4194	MSSRRSRQQSGSTRISDDQIIELVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLATIDADSPEAAIIRSLINQ.	93

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g02708	92	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	4	58	IPR011598	GO:0046983
	Seca10g02708	92	PANTHER	TRANSCRIPTION FACTOR PRE	1	90	IPR044293	GO:0006355\|GO:0040008\|GO:0046983
	Seca10g02708	92	FunFam	Transcription factor ILI6	5	87	-	-
	Seca10g02708	92	Pfam	Helix-loop-helix DNA-binding domain	22	58	IPR011598	GO:0046983
	Seca10g02708	92	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	20	78	IPR036638	GO:0046983
	Seca10g02708	92	Coils	Coil	55	75	-	-
	Seca10g02708	92	Gene3D	-	3	84	IPR036638	GO:0046983
	Seca10g02708	92	CDD	bHLH_AtPRE_like	9	75	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g02708	Seca-Chr10	34747218	34748380	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g02708	12	90	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT5G39860	76.250	9.28e-38	120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Seca10g02708		HLH	6.9e-05	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g02708	-		-	gmx:100794486	159.844

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca10g02708	10	34747218	34748380	Seca10g02708	10	34747218	34748380	ECH
	Seca10g02708	10	34747218	34748380	Seca10g02708	10	34747218	34748380	PCT