Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02702 ATGGAGGAGAGGACTGATATGGATAAGGTTGATGATGTGATGCCTGGTTTTCGTTTTCACCCCACAGATGAGGAGCTTGTTGATTTTTACCTCAAGAGAAAAATTCAACACAAGTCTCTTCCTATTGAACTGATTAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAAGAAGAGCTGGCGGGTACTGGGGAGAAAGAGTGGTATTTCTACTGTCCAAGGGACAGAAAATACAGAAACAGTGCAAGGCCAAATCGAGTGACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGATAGGCCTATATACTCCTCAGAAGGAAAATGCATTGGTTTAAAGAAGTCTCTTGTTTTCTATAGAGGCAGAGCTGCCAAAGGGATGAAAACTGACTGGATGATGCATGAGTTTAGGCTACCTTGTATATCAGACTCAGCCCCTCCCAAAAAATTCTCAGACAAAACCATCCCTCCAACTGATTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCCCTGTCCATGGTACAGAAGGCTTTATCTCACCCTTGGATCTCTCAGTTACCAGGAAGAATGGTATCTGATATATTCACACAGGGTGCAAACTGCAACAATCAGTTCTGTTCAGAGAATATCTCTTGCACAACAGAAGTAGTAGGATCATCAGCCATTCAATTTTGTGGTAAAAACCAGGAACAGCTACACCAAGTAGTCTCTAATGCCAACACCAACACCAGCTTCTCAGCTTCAGATATCAACCCCCCTTATAAACCTATCAATAGCAGCAGCACAATTTCCAAGTCCTCACAAATTCCTGTTTCAGATGGAGACCTTGCTGACAACCTCATCTTCTACACACATGAAGCAACAGGGCCCACCAAGTGCACAGTTGATGTTGGTTCCATGCTTTCCAACCCTGACTATATTGGTTTTGAAGAGCCAAACCAGCAGCAGCAGTATAGTGGCTTCTCAATTAGTCTACCTCAGGATATGCAACCAAACATTGGCACAGAGATAATAGGAGCAGAAGAACAAGGGTGGAGGAAGAACCAATTGGAAACAGTTGGGAGAACAATTGGATTTCCCTTCAGTTTGCCTCCAAATGATGCTTGGAAGGCTCCTCTGGCATGGGACTCACCCCTTTGCCCCACTGAAATGTCCACCACTTATTCCACTAATAAATGTTACATTTAA 1203 0.4339 MEERTDMDKVDDVMPGFRFHPTDEELVDFYLKRKIQHKSLPIELIKQVDIYKYDPWDLPKEELAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSAPPKKFSDKTIPPTDSWAICRIFKKTNSLSMVQKALSHPWISQLPGRMVSDIFTQGANCNNQFCSENISCTTEVVGSSAIQFCGKNQEQLHQVVSNANTNTSFSASDINPPYKPINSSSTISKSSQIPVSDGDLADNLIFYTHEATGPTKCTVDVGSMLSNPDYIGFEEPNQQQQYSGFSISLPQDMQPNIGTEIIGAEEQGWRKNQLETVGRTIGFPFSLPPNDAWKAPLAWDSPLCPTEMSTTYSTNKCYI. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02702 400 FunFam NAC domain-containing protein 35 22 175 - -
Seca10g02702 400 SUPERFAMILY NAC domain 13 172 IPR036093 GO:0003677|GO:0006355
Seca10g02702 400 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 246 - -
Seca10g02702 400 ProSiteProfiles NAC domain profile. 13 172 IPR003441 GO:0003677|GO:0006355
Seca10g02702 400 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Seca10g02702 400 Gene3D NAC domain 22 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02702 Seca-Chr10 34589801 34592387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02702 9 233 NAC Transcription Factor Family AT1G26870 65.502 2.45e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g02702 NAM 9.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02702 - - mtr:25495303 562.377