Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02698 ATGGGAAGACCACCTTGTTGTGATAAAGAAGGTGTCAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATATTGGTGTCTTATATACAGGAACATGGTCCTGGCAATTGGAAGGCTGTTCCCACCAATACTGGGTTGTCAAGGTGCAGTAAGAGCTGCAGACTTAGATGGACTAATTACCTCAGGCCAGGAATCAAAAGGGGTAACTTCACAGAACAAGAGGAGAAGATGATTATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCCATAGCTGCTTACCTTCCACAGAGAACAGATAATGACATAAAAAACTATTGGAATACCTATTTGAAGAAGAGGCTGAAGAAATTGGAAACAGGTACTACAGGAGGAAAAGGTAGTAACTTGGGACATGGGTTCTCAGTTTCTCAGCAAATGTCTAGAGGTCAGTGGGAAAGAAGGCTCCAAACTGACATCAATATGGCTAAGAGAGCTCTCAGTGAGGCTCTCTCACCAGACAACAACAAGACACCATCTTGCTTGTTACCACCTGAATCAATGAACCTTTCAAGTGATAGAAGCTCTTTTTGTTCCACAAAACCAACACAGTCTTTATGCTATGCTTCAAGTGCTGACAACATAGCTCGTTTGCTGAAAGGGTGGATGAAAAATCCACTAAAGGCCTCAAGTGCTGCTAACTCATCTGTGACTCAGAATTCCTTCAATAATAATAATAACAACTTGGGGACTGACACTGCTTCAAGTGGGGAAAAGGGAAACAGTGGTGTTGAGTTGTCTGAGACTTTTGAATCATTGTTTGGTGGTTATGATCAGTCTTTGGATTATTCTTCAAATTCTGAGTTTTCTCAATCTCTGTCCCCTGAGGCTACTCTTTTCCAAGATGAGAGCAAGCCAGATACAGATACTGGTGCAGATCAAATGCCATTTTCTTTGCTTGAGAAATGGCTTCTAGATGATGCTGCTGGTTGTCAAGACAAAGCTAGCTGCACTCAAATTACATCTTCTCAAATTGAAGCTATATTTTAG 1032 0.4167 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKRLKKLETGTTGGKGSNLGHGFSVSQQMSRGQWERRLQTDINMAKRALSEALSPDNNKTPSCLLPPESMNLSSDRSSFCSTKPTQSLCYASSADNIARLLKGWMKNPLKASSAANSSVTQNSFNNNNNNLGTDTASSGEKGNSGVELSETFESLFGGYDQSLDYSSNSEFSQSLSPEATLFQDESKPDTDTGADQMPFSLLEKWLLDDAAGCQDKASCTQITSSQIEAIF. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02698 343 CDD SANT 69 112 IPR001005 -
Seca10g02698 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 240 - -
Seca10g02698 343 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca10g02698 343 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca10g02698 343 CDD SANT 16 61 IPR001005 -
Seca10g02698 343 FunFam MYB-related transcription factor 13 66 - -
Seca10g02698 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca10g02698 343 SMART sant 13 63 IPR001005 -
Seca10g02698 343 SMART sant 66 114 IPR001005 -
Seca10g02698 343 Gene3D - 13 66 - -
Seca10g02698 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca10g02698 343 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca10g02698 343 Gene3D - 68 128 - -
Seca10g02698 343 MobiDBLite consensus disorder prediction 288 307 - -
Seca10g02698 343 MobiDBLite consensus disorder prediction 228 257 - -
Seca10g02698 343 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca10g02698 343 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02698 Seca-Chr10 34473417 34474711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02698 1 321 MYB Transcription Factor Family AT5G62470 51.420 3.04e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g02698 Myb_DNA-binding 6.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02698 K09422 - gmx:780543 446.817