Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02691 ATGGAGATAATAACCAGCGCCAACACCAACACCAACACCAACAACAACAACAACAACACAGCAAAATCACCCGAACCCGAAACCGAGACACCGACCCGGATCCAACAACAACCCATCAACACAAACACAAACGCAAACACAAAGCCTTTGTCTTTCTCTAACGGGGTACTGAAACGCCACCACCCCACTCATCACCACACTCACACTCACCAGCAACACAACGCCACCACAACAACAAACCAAGCGGTGGTGGTTACTTACAAAGAATGCTTGAAGAACCACGTGGCAAGCTTAGGTGGCCACGCCCTCGACGGTTGCGGCGAGTTCATGCCTTCACCCAACGCAAACGAAAACGACCCTAGTTCCATCAAATGCGCCGCCTGTGGCTGTCACCGGAACTTCCACCGCCGGGAACCGGAGGAACCCATAGCGGCGACTCATGTTTTTGAGTACCAGCCTCACCACCGTCACCACCCTCCTCCTCCTCCGCCGTTTCAGAATCGGAGCCCTAATTCGGCGTCTCCGCCGCCGATCTCGTCTTATCCCTCGGCGCCTCACATGCTCCTCGCACTCTCCGGTGGAGGACTCTCCGTCCCGCCGGAAAACACCGCCGCGCCGACGAATTTGTCCTCGCCGGTGGGGGGGACCAACTCGAGGAAGAGGTTCAGGACCAAGTTCACGCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCGGAGAGAGTTGGGTGGAAGATGCAGAAGAGGGATGAAGAATTGGTAATGGAGTTCTGCAATGAGGTTGGTGTTGATAGGGGAGTGCTCAAGGTTTGGATGCACAACAACAAGAACACTTTTGGGAAGAGAGATCATGTGAATGCTAACGGCACCACTGGAGGTGGTGGCGCCGTCGCCGTCGCCGGCGGTGGTGAACGTAACCCCAACGACAACCACAACCACAACAACATCGCTTCGCAGGATCAGAATCAGTATGAGAATGATAGCGGGACTAACGTTGCTACTAATGGGTCTTCTTCTTCTTCTTGA 1023 0.5455 MEIITSANTNTNTNNNNNNTAKSPEPETETPTRIQQQPINTNTNANTKPLSFSNGVLKRHHPTHHHTHTHQQHNATTTTNQAVVVTYKECLKNHVASLGGHALDGCGEFMPSPNANENDPSSIKCAACGCHRNFHRREPEEPIAATHVFEYQPHHRHHPPPPPPFQNRSPNSASPPPISSYPSAPHMLLALSGGGLSVPPENTAAPTNLSSPVGGTNSRKRFRTKFTQEQKEKMHEFAERVGWKMQKRDEELVMEFCNEVGVDRGVLKVWMHNNKNTFGKRDHVNANGTTGGGGAVAVAGGGERNPNDNHNHNNIASQDQNQYENDSGTNVATNGSSSSS. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02691 340 MobiDBLite consensus disorder prediction 152 219 - -
Seca10g02691 340 SUPERFAMILY Homeodomain-like 208 280 IPR009057 -
Seca10g02691 340 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 86 138 IPR006456 -
Seca10g02691 340 MobiDBLite consensus disorder prediction 201 219 - -
Seca10g02691 340 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 87 138 IPR006456 -
Seca10g02691 340 NCBIfam homeobox domain, ZF-HD class 219 276 IPR006455 -
Seca10g02691 340 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 61 277 - -
Seca10g02691 340 MobiDBLite consensus disorder prediction 158 182 - -
Seca10g02691 340 FunFam Zinc-finger homeodomain protein 2 207 280 - -
Seca10g02691 340 MobiDBLite consensus disorder prediction 1 53 - -
Seca10g02691 340 MobiDBLite consensus disorder prediction 306 340 - -
Seca10g02691 340 MobiDBLite consensus disorder prediction 281 340 - -
Seca10g02691 340 Pfam ZF-HD protein dimerisation region 85 139 IPR006456 -
Seca10g02691 340 Gene3D - 205 279 - -
Seca10g02691 340 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02691 Seca-Chr10 34245548 34246591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02691 1 275 ZF-HD Transcription Factor Family AT5G15210 49.643 2.36e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca10g02691 ZF-HD_dimer 3.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02691 - - lja:Lj5g3v2258260.1 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02691 10 34245548 34246591 Seca10g02691 10 34245548 34246591 ECH
Seca10g02691 10 34245548 34246591 Seca10g02691 10 34245548 34246591 PCT