Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02667 ATGGAAGCAATGAAGAACAATTCCAGAGCTATGGAGGGAGATAAGAAGCTTGAATTGCCACCAGGATTCAGGTTTCATCCAACAGATGAAGAACTCATAACTCACTACCTTTCACAGAAGGTTCTTGACAGCAGCTTCTGTGCTAGAGCCATTGCAGATGTTGATTTGAACAAGTGTGAACCATGGGATTTGCCTTGGTTGTCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTGTTTGAGGGACAGAAAATACCCAACTGGACTAAGGACAAACAGGGCCACTAATGCTGGTTATTGGAAGGCCACAGGCAAAGACAGAGAGATATACAGAGGAAGGACATTGATTGGAATGAAGAAAACTCTGGTTTTTTATAAAGGAAGAGCTCCAAAAGGTGGAAAAACAAACTGGGTCATGCATGAATACAGATTGGAAGATAAACATTCTATTCATAATCCACACAGAATTGCTATGAATGATTGGGCTATCTGCAGAGTTTTTGAGAAAGGTTCTTGTGGAAAGAAGATGCATGTTCCTGAGTTGGTAAGGTTCAGCTCCCTTGTCAAGGAACTGCCTTCATTGATGAATTCTTCTCCATACAACAGTGAAACAAAAACTGGTGCTGGGGAATCATCACATGTGACCTGTTTCTCTGATCCAAATCAAAATGATGATAGAAAGACACAAGATGACATAGTTGATAGCTTTGAAACTCCTATCTTGGCATCATCATATTCTCCAAATCCAAACCCCTCTGATATCTCCCCTGCCTCATGGACTTTTACCAAAGCTGCCCCTACTGTGTCCCACCAAGCCACACAAATTGCACAAGTTGGGAATTCACAATGCTCAGATTATTTTGTGGTTCAAGAACAGTCCATGATGAGGATGTTGACTGAAAACCATGGAACAAGTACAAAGCAAAAAAATCAAAAAGCTCATGAAAAGGACTTTAATGCTGACATCTCCCCTGTGATGTACAACAATGAAATGTTTCAAAGATCGTTTGGGGATCAGGAATTTTCATCAGCTTCAATAGGACATGGATGCTTATGGAATATCTAA 1065 0.4047 MEAMKNNSRAMEGDKKLELPPGFRFHPTDEELITHYLSQKVLDSSFCARAIADVDLNKCEPWDLPWLSKMGEKEWYFFCLRDRKYPTGLRTNRATNAGYWKATGKDREIYRGRTLIGMKKTLVFYKGRAPKGGKTNWVMHEYRLEDKHSIHNPHRIAMNDWAICRVFEKGSCGKKMHVPELVRFSSLVKELPSLMNSSPYNSETKTGAGESSHVTCFSDPNQNDDRKTQDDIVDSFETPILASSYSPNPNPSDISPASWTFTKAAPTVSHQATQIAQVGNSQCSDYFVVQEQSMMRMLTENHGTSTKQKNQKAHEKDFNADISPVMYNNEMFQRSFGDQEFSSASIGHGCLWNI. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02667 354 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Seca10g02667 354 SUPERFAMILY NAC domain 14 169 IPR036093 GO:0003677|GO:0006355
Seca10g02667 354 Gene3D NAC domain 28 172 IPR036093 GO:0003677|GO:0006355
Seca10g02667 354 MobiDBLite consensus disorder prediction 197 222 - -
Seca10g02667 354 FunFam NAC domain-containing protein 100-like 28 173 - -
Seca10g02667 354 MobiDBLite consensus disorder prediction 197 229 - -
Seca10g02667 354 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Seca10g02667 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02667 Seca-Chr10 33692389 33694391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02667 17 347 NAC Transcription Factor Family AT5G07680 51.796 3.25e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g02667 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02667 - - gmx:100785620 511.146