Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02662 ATGGGACGATCACCATGCTGTGAAAAGGTTGGCTTAAAGAAAGGACCATGGACTCCTGAGGAAGATCAGAAGCTCTTAGCTTATATTGAAGAACATGGTCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCAGGACTTCAAAGGTGTGGGAAGAGTTGTAGACTAAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAATTCAGTTTGCAAGAAGAGCAAACCATTATTCAACTTCATGCCCTCTTAGGGAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGGACGGATAATGAGATCAAAAACTATTGGAACACACATCTTAAGAAAAGGCTAACAAAAATGGGAATTGATCCAGTGACCCACAAGCCCAAAAACGACGCCCTTCTCTCTAGTGACGGCCAATCCAAAACCGCTGCAAATCTCAGCCACATGGCACAGTGGGAGAGTGCTCGCCTTGAAGCTGAAGCAAGACTTGTTAGGGAATCAAAATTGCGTTCACATCAACATCATGTGTTTCCATCTTCATCTTCATCTTCTCTCAACAACAAACAAGACTCAACACCACCACCACAACCTTTGCCTTCTTCTTCATCATCACATTCCCTTGATGTGCTCAAGGTTTGGAACAATGGAGGATGGTTAAAACCCAACAATGAAGGAAATGGTGGCATTGGTAGCACTAGTGGGGACCTTGAGTCACCTACTTCTACTTTATCTTTCTCTGAGAATGTGCCACCAATTATGACTATTGGAGGAGGAGAAAATAATAATAATAACAACAATAATGTATTGCCTATGATTGAGTTTGTGGGAACTTCAGGTTCTTGTGAAGGAGCTGTGAAAGAAGAAGGTGATCAGTGGAAAGGTTATGAAAGTTCAATGACTTCTTTTGCGTCTGGTTTACAATATGAATTGACAATGTCTATGGAAGGCACGTGGGCTTCTGAGTCTCTTAGGACTAATGGTGGTTCTAATTCACATGGAGGAGTTGTTGGTGATGCCATTGTTGAGGAAGGTTTCACCAATCTTTTGCTTAAAATAAACTCCGATGACCGGAGTTTGTCGGAGGGTGGGGGAGAATCTAACCATGGTGATGAAGGCGGTGGCAATGGTGGTGGTAGCAGTGATTTCTATGAAGATAACAATAACTACTGGAATAGCATTCTTAATTTAGTGAATTCTTCCCCTTCTCATACCACAATGTTTTGA 1224 0.4257 MGRSPCCEKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHQHHVFPSSSSSSLNNKQDSTPPPQPLPSSSSSHSLDVLKVWNNGGWLKPNNEGNGGIGSTSGDLESPTSTLSFSENVPPIMTIGGGENNNNNNNNVLPMIEFVGTSGSCEGAVKEEGDQWKGYESSMTSFASGLQYELTMSMEGTWASESLRTNGGSNSHGGVVGDAIVEEGFTNLLLKINSDDRSLSEGGGESNHGDEGGGNGGGSSDFYEDNNNYWNSILNLVNSSPSHTTMF. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02662 407 Gene3D - 13 66 - -
Seca10g02662 407 CDD SANT 69 112 IPR001005 -
Seca10g02662 407 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca10g02662 407 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca10g02662 407 MobiDBLite consensus disorder prediction 132 147 - -
Seca10g02662 407 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca10g02662 407 MobiDBLite consensus disorder prediction 356 380 - -
Seca10g02662 407 CDD SANT 16 61 IPR001005 -
Seca10g02662 407 MobiDBLite consensus disorder prediction 174 191 - -
Seca10g02662 407 MobiDBLite consensus disorder prediction 219 261 - -
Seca10g02662 407 Gene3D - 69 116 - -
Seca10g02662 407 FunFam MYB transcription factor 69 116 - -
Seca10g02662 407 SMART sant 66 114 IPR001005 -
Seca10g02662 407 SMART sant 13 63 IPR001005 -
Seca10g02662 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca10g02662 407 FunFam MYB-related transcription factor 13 66 - -
Seca10g02662 407 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 197 - -
Seca10g02662 407 MobiDBLite consensus disorder prediction 119 147 - -
Seca10g02662 407 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca10g02662 407 MobiDBLite consensus disorder prediction 168 261 - -
Seca10g02662 407 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca10g02662 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02662 Seca-Chr10 33645352 33648428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02662 1 407 MYB Transcription Factor Family AT3G01140 55.854 1.19e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g02662 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02662 K09422 - gmx:100101835 564.688