Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02656 ATGGAAGGATCATCATGTGTGAGAAAAGGCGCATGGAGTAAAATGGAAGATGACCTTCTCAGGGCTTGTGTACTGCAATATGGGGAAGGAAAATGGCACCTAGTGCCCACAAGATCAGGCTTGAACAGATGCCGGAAAAGTTGTAGATTGCGATGGTTGAATTATCTAAAACCAAGCATCAACAGGGGAGAGTTCACCGAAGATGAAGTTGACATGATGAAAAGATTGCATAGACTTTTGGGAAACAGATGGTCCCTAATTGCTGGAAGACTTCCTGGAAGAACTCCAAATGATGTGAAAAACTATTGGAATACATATGTTCGCAAAAATGTATCCTTTGATAAGGGATCAGCAAAACCAAAGGAAAGTACTGTGAAACCTCATGTAGTGATAAAGCCTCGGCCTCGAACTTTGTCAGGAAGGATAGATCAAAGTGGGGCCCCTAATCAAGCATGTGCAACTTCATCAAAGTGCAATATTAATAATAACAACTCTAAAGAAGATCAGTGGTGGGGAACTATTATGGATGACGTTAACAAAGATAAACCAGAGAATGAGGATGGGTACCTTAAAGACTTTCTTTTAGAAGGTGAAAGTTGGAGTGATTTTCTTCTTGATATCAATTTATGGGATTAA 636 0.3994 MEGSSCVRKGAWSKMEDDLLRACVLQYGEGKWHLVPTRSGLNRCRKSCRLRWLNYLKPSINRGEFTEDEVDMMKRLHRLLGNRWSLIAGRLPGRTPNDVKNYWNTYVRKNVSFDKGSAKPKESTVKPHVVIKPRPRTLSGRIDQSGAPNQACATSSKCNINNNNSKEDQWWGTIMDDVNKDKPENEDGYLKDFLLEGESWSDFLLDINLWD. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02656 211 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Seca10g02656 211 FunFam Myb transcription factor 9 61 - -
Seca10g02656 211 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Seca10g02656 211 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Seca10g02656 211 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Seca10g02656 211 Gene3D - 9 61 - -
Seca10g02656 211 SMART sant 8 58 IPR001005 -
Seca10g02656 211 SMART sant 61 109 IPR001005 -
Seca10g02656 211 CDD SANT 64 107 IPR001005 -
Seca10g02656 211 Gene3D - 63 129 - -
Seca10g02656 211 SUPERFAMILY Homeodomain-like 8 103 IPR009057 -
Seca10g02656 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Seca10g02656 211 CDD SANT 11 56 IPR001005 -
Seca10g02656 211 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 164 - -
Seca10g02656 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 56 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02656 Seca-Chr10 33511350 33512667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02656 2 176 MYB Transcription Factor Family AT1G66370 46.635 5.09e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g02656 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02656 - K16166 cam:101494325 262.692