Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02644 ATGGCAAGGAAGAGAAAGTCTGCTGAAGTAGTAGAAGATAGAAACCTATCTGAGGGAACCATGGCTTGGGATGAGATGATGAAGCAAGCTGCAGCACTTGGAGGAGCCAGGAGAACAAGGAAGAGATTTGTTGGGGTCAGGCAAAGGCCATCTGGTAGATGGGTTGCTGAGATAAAAGACACCATTCAGAAGATAAGGGTGTGGTTAGGAACTTTTGATACTGCTGAGGAAGCTGCTAGAGCCTATGATGAAGCTGCTTGTTTGCTTCGTGGTGCTAACACTAGGACTAATTTCTGGCCTTGTTCTCAATCTTCTGCAAGTCCAGCTCTTTCTTCAAAGATCACTAATCTCCTCCTTCAAAGGCTTAAAGAAAGGAACAACTCTTGTTCTTCTTCTTCTTCTTCCTCTTCCATCTCTAGCTCCCTTCTTATCAACCATCAACAAATGCAACAAGTAGATGCATATGGAGCAGTGCCAACAGAATTCTCAATTGACCAATTCACTGATTTCCTTAATGATCCTGAAGATTATTGCACAAGCAACAATGACTTCATCAACAACAGTGCACAAATTGATTATATTACAAGTAGTTTTGAATCATGTTTAACTGAAAAGGATCACTGCAGGGGGACAGAAATGGATATGGAATGTAAATCCAGCAATGTGACACAAACTTCAAGTAATGACAGCAATTCAGGAGTGGAAAGAGAGGAAGACAGTGAAGAAGAAGGCAGCCAAGGTACTGATTTGTGTGTCCAAGACACTAATTTGGATGTCCCAGATTTTAGATTTCTGGATACTGTTGCTCCACCAAGTTACTATTCTCCTTTTGAGATAGCTGAAGAGATGGAGGAGCCTGTGGAGCCAGAGAACTATGGTGATGAGCCTTCAATGCTTAGAGCTGTCATGAAGAGAATGAAATATGAAAGGAAGTTCTCAGCTTCTCTCTATGCCTTCAATGGGATACCTGAGTGCTTGAAGTTGAAACTGGAATCAGGAGGAAGAGGAATGGCTGATCACTTAACCAACCTCCAGACAGCCTGTAGCAAAAACAAACTTGAGAAGAATAAGGAGGAGAAGGAATACATGGTAGCAATGAATGGGAAGGAGGAAGAAAACCATCAAACATCAATTGACATGGATTCCTCTTCTTCATCTAGTATTGATGGAGAACTGTTACTTTGGAATTCACTAGATCTTCCTCCTATTTGCTTTGTTAACTTACTGGAAAACGTTATTTCCCTTTTCTTCTATTTCCTCTTTTGCATTCTTATGAATATCTTCCTTTACCAGTTCTTGATTAGTAATCACAGAGCAGACAAAAAAGAGTATAATTTATCTGAATTTTATGATAAGTTGGACAATGCATACAATGATCCAGCTCTTATGCAAGTCAAATATCTTGAAAGGTCCAATAGTTTCAGCTTTCTCCTACTTAGTTCTGAAATGTAG 1452 0.4008 MARKRKSAEVVEDRNLSEGTMAWDEMMKQAAALGGARRTRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSASPALSSKITNLLLQRLKERNNSCSSSSSSSSISSSLLINHQQMQQVDAYGAVPTEFSIDQFTDFLNDPEDYCTSNNDFINNSAQIDYITSSFESCLTEKDHCRGTEMDMECKSSNVTQTSSNDSNSGVEREEDSEEEGSQGTDLCVQDTNLDVPDFRFLDTVAPPSYYSPFEIAEEMEEPVEPENYGDEPSMLRAVMKRMKYERKFSASLYAFNGIPECLKLKLESGGRGMADHLTNLQTACSKNKLEKNKEEKEYMVAMNGKEEENHQTSIDMDSSSSSSIDGELLLWNSLDLPPICFVNLLENVISLFFYFLFCILMNIFLYQFLISNHRADKKEYNLSEFYDKLDNAYNDPALMQVKYLERSNSFSFLLLSSEM. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02644 483 MobiDBLite consensus disorder prediction 217 251 - -
Seca10g02644 483 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 324 - -
Seca10g02644 483 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Seca10g02644 483 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Seca10g02644 483 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Seca10g02644 483 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Seca10g02644 483 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Seca10g02644 483 MobiDBLite consensus disorder prediction 217 231 - -
Seca10g02644 483 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Seca10g02644 483 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Seca10g02644 483 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Seca10g02644 483 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02644 Seca-Chr10 33254845 33256717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02644 36 118 AP2-EREBP Transcription Factor Family AT5G19790 69.880 3.49e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca10g02644 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02644 K09286 - gmx:100786711 598.586