Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02643 ATGAATGGATCAACTGGCCGTAGTGATGGTGATGAAAGTGTGGACATGTTTCTACAGAATTATAAGTTAAGAAAAACACTTGGAGTTGGGGCCTTTGGTAGGTTGATACTTGCAGAGCATGTATTGAATGGGGATAAAGTTGCCATAAAGATCTTTCACCGCCGCAAGATGGAGAACATGAAAATGGAAGAACAAGTGAGAAGAAAAATAAATAATTTAAGAATGTTAACACATCCTCATATTTTACGAGTTAATGAGGTGTTAGAAAACCCAAAAGAGGTATATGTTGTTATGGAGTATGCAGAATCTGGAGAGCTCTTTGACTATGTAGTAGAAAAGGGTAGGTTGCAAGAAGATGAAGCACGCAAGTTTTTTCAGCAGATCATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACCTGAAGCTTGAGAATTTGTTATTGGACTCAAAATACAATGTCAAGATCGCTGGTTTTGGCTTAAGCAATATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGTGGAAGCCCTGCCTATGCAGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGGGCTGTGGTGTAATTTTATACTCTCTGCTCTGTGGCACCCTTCCTTTTGATGACGAAAACATTCCCAACCTCTTCAAAAATATCAAGGGAGGGATATACATTCTTCCTAGTCATCTATCACATGGTGCTAGAGATTTGATATCAAGGATGCTTGTGGTGGATCCTATGAAGAGGATGACCATACCTGAGATACGCCAACACACATGGTTCCAAGTTTCTCTGCCGCGTTATTTAGCATTGCCACCGCCAGATCATATAATGCAACTAACTAAAAAGTGGAAGCTGTGGCTCGACAATATAGGTTGCAAAAATGTCTTTTGTCTATTATTGGAACTGAGTTCATTGCTTCCATCAAAGCTTGTAAAATGTTGCTTTGGATGTTTTGATGACGAATTTAATGCATCAGCTTGGTTTGGCTCAAAAGAGGAGGCTAAGTTGCTGGAGTTTGAAAAGATTAACAGTGATGACAATGATTCAGATATACTGACAAAGCCTACCCAAAGGAAGTTAATTTGA 1125 0.3991 MNGSTGRSDGDESVDMFLQNYKLRKTLGVGAFGRLILAEHVLNGDKVAIKIFHRRKMENMKMEEQVRRKINNLRMLTHPHILRVNEVLENPKEVYVVMEYAESGELFDYVVEKGRLQEDEARKFFQQIISGVEYCHRNMVVHRDLKLENLLLDSKYNVKIAGFGLSNIMRDGHFLKTSCGSPAYAAPEVISGKLYAGPEVDVWGCGVILYSLLCGTLPFDDENIPNLFKNIKGGIYILPSHLSHGARDLISRMLVVDPMKRMTIPEIRQHTWFQVSLPRYLALPPPDHIMQLTKKWKLWLDNIGCKNVFCLLLELSSLLPSKLVKCCFGCFDDEFNASAWFGSKEEAKLLEFEKINSDDNDSDILTKPTQRKLI. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02643 374 FunFam Non-specific serine/threonine protein kinase 6 102 - -
Seca10g02643 374 SUPERFAMILY Protein kinase-like (PK-like) 17 290 IPR011009 -
Seca10g02643 374 Pfam Protein kinase domain 21 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02643 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Seca10g02643 374 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Seca10g02643 374 ProSiteProfiles Protein kinase domain profile. 21 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02643 374 Gene3D Transferase(Phosphotransferase) domain 1 11 298 - -
Seca10g02643 374 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 19 279 - -
Seca10g02643 374 FunFam Non-specific serine/threonine protein kinase 102 285 - -
Seca10g02643 374 CDD STKc_AMPK_alpha 20 273 - -
Seca10g02643 374 SMART serkin_6 21 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02643 Seca-Chr10 33232453 33236194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02643 21 273 CBL-interacting serine-threonine protein kinases AT4G24400 46.850 2.09e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Seca10g02643 Pkinase 1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02643 K07198 - pop:7480582 476.478