Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02642 ATGGATGGATCAACTGGCCGTGGTGGTGGAAGTGTAGACATGTTTCTACGAAATTATAAGTTGGGAAAAACTCTGGGAATTGGATCCTTTGGCAAGGTGAAAATTGCAGAGCATGTATTGACTGGTCATAAAGTTGCCATAAAGATCCTCAACCGCCGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATCATACGACTTTATGAGGTCGTAGAAACCCCAACAGACATATATATGGTGATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTAGAAAAGGGTAGGTTGCAAGAAGACGAGGCCCGCAATTTTTTTCAGCAGATAATCTCTGGCGTGGAGTACTGTCACAGGAATATGGTGGCTCACAGAGACCTGAAGCCTGAGAATTTGCTTTTGGACTCAAAATGCAGTGTCAAGATTGCGGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTCAAGACAAGTTGTGGAAGCCCTAACTATGCAGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTTTGGAGCTGTGGTGTAATTTTATACGCTCTTCTATGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTCTTCAAAAAAATAAAGGGTGGGATATATACTCTTCCTAGTCATCTATCACCTGGTGCCAGAGATTTGATACCAAGGATGCTTGTGGTGGATCCAATGAAAAGGATGACCATACCTGAGATACGCCAACACCCATGGTTCCAAGTTCGTCTGCCGCGTTATTTAGCAGTGCCACCACCCAATACAATCCAACAAGCCAAAAAGATTGATGAGGAGATTCTTCTGGAAGTGGTTAATATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGCAACAGGATACAAAATGAGGGTACTGTAACATACTATTTATTATTCGACAACCGGTTTCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATTCTGGTTTCAACCGTATCCATTCCAGCGAAGTTGCTTCTCCAATTGTTGGGCACCGCATTTCAGGGTATATGGATTATCAAGGGGGAGGAATAAGGCAACAGTTCCCTGTTGAAAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCAACCTCGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTGTTTTGGAAAAAGATTGGACACTATAACATGAAGTGCAAATGGGTTGCTGGCATCCCTGGTCATCATGAAGGAATGATTAACAATTCTGTGAATAATCATCATTACCTTGGAAATTCCAGCATTATTGAGAATGAAGCTGTTTCTAAGTCAAATGTGGTCAAATTTGAAGTGCAGCTTTACAAAACTCGTGAGGATAAGTATCTGCTCGATCTTCAAAGGGTCGAGGGCCCACAGTTTCTTTTCTTGGATCTTTGTGCTGCTTTCCTTGCGCAGCTTCGTGTTCTCTAG 1542 0.4215 MDGSTGRGGGSVDMFLRNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVVETPTDIYMVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVAHRDLKPENLLLDSKCSVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQVRLPRYLAVPPPNTIQQAKKIDEEILLEVVNMGFDRNQLVESLGNRIQNEGTVTYYLLFDNRFRVSSGYLGAEFQETMDSGFNRIHSSEVASPIVGHRISGYMDYQGGGIRQQFPVERKWALGLQSRAQPREIMTEVLKALQELNVFWKKIGHYNMKCKWVAGIPGHHEGMINNSVNNHHYLGNSSIIENEAVSKSNVVKFEVQLYKTREDKYLLDLQRVEGPQFLFLDLCAAFLAQLRVL. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02642 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Seca10g02642 513 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 17 314 - -
Seca10g02642 513 FunFam Non-specific serine/threonine protein kinase 395 511 - -
Seca10g02642 513 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Seca10g02642 513 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02642 513 Pfam UBA/TS-N domain 293 329 IPR015940 -
Seca10g02642 513 FunFam Non-specific serine/threonine protein kinase 10 349 - -
Seca10g02642 513 SMART uba_6 294 331 IPR015940 -
Seca10g02642 513 Pfam Kinase associated domain 1 470 512 IPR001772 -
Seca10g02642 513 CDD STKc_AMPK_alpha 16 271 - -
Seca10g02642 513 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02642 513 CDD UBA_SnRK1_plant 293 333 - -
Seca10g02642 513 CDD AMPKA_C 389 510 - -
Seca10g02642 513 SUPERFAMILY Protein kinase-like (PK-like) 16 285 IPR011009 -
Seca10g02642 513 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02642 513 Gene3D Kinase associated domain 1, KA1 395 511 - -
Seca10g02642 513 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Seca10g02642 513 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 464 512 IPR001772 -
Seca10g02642 513 Gene3D Transferase(Phosphotransferase) domain 1 10 350 - -
Seca10g02642 513 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Seca10g02642 513 SUPERFAMILY KA1-like 328 512 IPR028375 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02642 Seca-Chr10 33209409 33221842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02642 19 271 CBL-interacting serine-threonine protein kinases AT4G24400 52.362 1.39e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Seca10g02642 Pkinase 1.2e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02642 K07198 - gmx:547544 954.51