Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02641 ATGTGTGATGGTCACTTTCTCAAGACAAGTTGTGGAAGTCCTAACTATGCAGCTCCAGAGGTTATCTCTGAAAAATTGTATGCTGGACCTGAAGTAGATGTTTGGAGCTGTGGTGTAATTTTATACGCTCTTCTATGTGGCACTCTTCCTTTTGATGATGAAAACATTCACAACCTCTTCAAAAAAATAAAGGGTGGGATATATACTCTTCCTAGTCATCTATCACCTGGTGCCAAAGATTTGATAGAAAGGATGCTTGTGGTGGATCCAATGAAAAGGATGACCATACCTGAGATACGCCAACACCCATGGTTCCAAGTTCATCTGTCGCGTTATTTAGCTGTGCCACCACTAGATACAATCCAACAAGCCAAAAAGATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGAGATTTGACAGGAATCAATTGGTTGACTCTCTTGTCAACAGGATACAAAATGAGGGTACTGTAACATACTATTTATTATTCGACAACCGGTTTCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAAGGGACAATGGACTCTGGTTTCAACCGTATCCATTCCAGCGAAGTTGCTTCTCCAATTGTTGAGCACCGCATTTCAGGGTATATGGATTATCAAGGGGGAGGAATAAGGCAACAGTTCCCTGTTGAAAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCAACCTCGTGAAATAATGGCTGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTGTTTTGGAAAAAGATTGGACACTATAACATGAAGTGCAAATGGGTTGCTGGCAACCCTGGTCATCATGAAGGAATGATTAACAACTCTGTGCATAATCATCATTACCTTGGAAATTCCAGCATTATTGAGAATGAAGCTGTTAATTATATGTCTAATGTAGTCAAATTTGAAGCACAGCTTTACAAAACTCGTGAGGATAAGTATCTGCTCGATCTTCAAAGGGTCCAGGGCCCACTGTTTCTTTTCTTGGATCTTTGTGCTGCTTTTCTTGCGCAGCTTCGTGTTCTCTAG 1047 0.4136 MCDGHFLKTSCGSPNYAAPEVISEKLYAGPEVDVWSCGVILYALLCGTLPFDDENIHNLFKKIKGGIYTLPSHLSPGAKDLIERMLVVDPMKRMTIPEIRQHPWFQVHLSRYLAVPPLDTIQQAKKIDEEILQEVVNMRFDRNQLVDSLVNRIQNEGTVTYYLLFDNRFRVSSGYLGAEFQGTMDSGFNRIHSSEVASPIVEHRISGYMDYQGGGIRQQFPVERKWALGLQSRAQPREIMAEVLKALQELNVFWKKIGHYNMKCKWVAGNPGHHEGMINNSVHNHHYLGNSSIIENEAVNYMSNVVKFEAQLYKTREDKYLLDLQRVQGPLFLFLDLCAAFLAQLRVL. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02641 348 PANTHER SERINE/THREONINE KINASE 6 170 - -
Seca10g02641 348 Pfam Kinase associated domain 1 305 347 IPR001772 -
Seca10g02641 348 SUPERFAMILY KA1-like 162 347 IPR028375 -
Seca10g02641 348 CDD AMPKA_C 223 345 - -
Seca10g02641 348 FunFam Non-specific serine/threonine protein kinase 229 346 - -
Seca10g02641 348 ProSiteProfiles Protein kinase domain profile. 1 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02641 348 CDD UBA_SnRK1_plant 127 167 - -
Seca10g02641 348 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 126 166 IPR015940 -
Seca10g02641 348 Pfam Protein kinase domain 7 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02641 348 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 299 347 IPR001772 -
Seca10g02641 348 SMART serkin_6 1 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02641 348 SUPERFAMILY Protein kinase-like (PK-like) 5 133 IPR011009 -
Seca10g02641 348 Gene3D Kinase associated domain 1, KA1 229 346 - -
Seca10g02641 348 Gene3D Transferase(Phosphotransferase) domain 1 2 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02641 Seca-Chr10 33194448 33204254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02641 3 295 CBL-interacting serine-threonine protein kinases AT5G10930 30.034 3.27e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Seca10g02641 Pkinase 1.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02641 K07198 - gmx:547544 618.231