LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g02640	ATGGGTTGCATTAGCTCTAAACATGTGGTTGCCGGAGCTTCTTCTCCGTCGCCGGCCGTCGGTGACATTTTGGAGGCTCTTCCTGCTTCCAATGGTCGTTCTGGGTTGCAGGTTTTGGAATCCAAAACATCGTCAGAGGACAATAGGAACAAGTTGAAGAAAAACAGTTCAAAAAAAAGCAATGGCTCTTTCAGCTTCAGGATTGGGTTCAACAATAGGTATGTGGATGCTGAACAGAATGCCGCTGGTTGGCCTCCTTGGCTCACAGCTGCAGCAGCAGAAGCTGTTCAAGGATGGATCCCCCTCAAAGCTGATGCTTTTCAGAAGTTAGATAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTGGAAACTGGGAGGATGTTTGCTCTGAAGAAGGTGCGCTTTGACAATTTCCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATTCTCCGAAGGCTTGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCTCGACTATCAAATAGTATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCGCGTCCTGACATCGTGTTCACTGATGCACAGATTAAATGTTACATGAGGCAGCTTTTAAGTGGACTTGAGCATTGTCATGTCCGTGGTATTATGCATCGAGACATTAAAGTATCAAATATCTTATTAAACAATGAAGGGATTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCCCAAATAACAAGCATCAATTAACAAGCCGTGTAGTGACTCTTTGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAATTATGGAGTATCAGTGGATCTGTGGAGTGTTGGCTGTGTGTTTGCAGAACTTTTTCTGGGGAAACCTATCCTTAAGGGGAGAACTGAGGTAATGCTTATGATTGATCTACAGGTTGAACAATTGCACAAAATCTTTAAGCTGTGTGGTTCTCCACCTGATGAGTTCTGGAAAAAATACAAGCTTCCTCATGCAACAATGTTTAAACCTCAGACTAATTATGAAAGCTCTCTTCAGGAGAGGTGTGTGGATTTTCCTGAGACTGCTGTAAACCTACTTGAGACTTTACTTTCCATTGACCCTAGTAAGCGTGGGACTGCCTCCTCTGCTCTAATATCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATCCATCAAGCCTGCCAAAGTATCCACCTAGCAAAGAAATGGATGCTAAAAATCGGGATGATGCATCCAGGAAAAAGACTGGAGGTAAAATGCGAGAAGTTGTAACATCAAGAAGGCAGCAAAGAAGAATCCGTAAAGGTTTGCAAGAACCAAATGATTTTGGTAAAGCAACTTCAAAAGAGGACATGCAGAATATTTCTCAAAATGCTCGTAGAGATGATGGTAAAGCACATCATCCAAAGGGAAAAGGAGGAGCTATGCACAAAGAGCCACCAAAGTCTGCATTGGATACTATGTCAGAGGCTTCCCAAATGATGAATGTTGCTAATGGTAATGGCTATAGTGTACCCGTACATGTCCAAGGATCTAATGATTTTACATGGTCTAAAAGGAGAAAACCAGATGCATCATCAACACTATCAGATGGCTCAAGAAGCAAAATTAGTGCACTGGATCCAAACTTTGCAAAAGGCACATATGATTTAACCACACAAAGGGTATCTATGGATTTTGATCCCAAAGAACTGATAAATGCACAGGCCCAAAAAGAAGAACGAGGTGCACATTGGAATGAAAATGGTATGCGGCGTCCAATTCGTAAATCAAGATTTGGAAGAGACATGTGA	1845	0.4217	MGCISSKHVVAGASSPSPAVGDILEALPASNGRSGLQVLESKTSSEDNRNKLKKNSSKKSNGSFSFRIGFNNRYVDAEQNAAGWPPWLTAAAAEAVQGWIPLKADAFQKLDKIGQGTYSSVFRAREVETGRMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDIVFTDAQIKCYMRQLLSGLEHCHVRGIMHRDIKVSNILLNNEGILKIGDFGLANTISPNNKHQLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVMLMIDLQVEQLHKIFKLCGSPPDEFWKKYKLPHATMFKPQTNYESSLQERCVDFPETAVNLLETLLSIDPSKRGTASSALISEYFSTKPYACNPSSLPKYPPSKEMDAKNRDDASRKKTGGKMREVVTSRRQQRRIRKGLQEPNDFGKATSKEDMQNISQNARRDDGKAHHPKGKGGAMHKEPPKSALDTMSEASQMMNVANGNGYSVPVHVQGSNDFTWSKRRKPDASSTLSDGSRSKISALDPNFAKGTYDLTTQRVSMDFDPKELINAQAQKEERGAHWNENGMRRPIRKSRFGRDM.	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g02640	614	MobiDBLite	consensus disorder prediction	472	496	-	-
	Seca10g02640	614	MobiDBLite	consensus disorder prediction	588	614	-	-
	Seca10g02640	614	FunFam	probable serine/threonine-protein kinase At1g54610	94	189	-	-
	Seca10g02640	614	MobiDBLite	consensus disorder prediction	34	60	-	-
	Seca10g02640	614	Gene3D	Transferase(Phosphotransferase) domain 1	190	439	-	-
	Seca10g02640	614	SMART	serkin_6	107	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g02640	614	Gene3D	Phosphorylase Kinase; domain 1	94	189	-	-
	Seca10g02640	614	PANTHER	CELL DIVISION PROTEIN KINASE	105	403	-	-
	Seca10g02640	614	MobiDBLite	consensus disorder prediction	531	551	-	-
	Seca10g02640	614	ProSiteProfiles	Protein kinase domain profile.	107	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g02640	614	MobiDBLite	consensus disorder prediction	406	503	-	-
	Seca10g02640	614	SUPERFAMILY	Protein kinase-like (PK-like)	102	404	IPR011009	-
	Seca10g02640	614	FunFam	probable serine/threonine-protein kinase At1g54610	190	439	-	-
	Seca10g02640	614	ProSitePatterns	Protein kinases ATP-binding region signature.	113	136	IPR017441	GO:0005524
	Seca10g02640	614	MobiDBLite	consensus disorder prediction	418	456	-	-
	Seca10g02640	614	Pfam	Protein kinase domain	107	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g02640	614	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	227	239	IPR008271	GO:0004672\|GO:0006468
	Seca10g02640	614	CDD	STKc_CDK9_like	107	399	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g02640	Seca-Chr10	33166699	33173696	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g02640	99	439	Core Cell Cycle Gene Families	AT5G10270	45.787	1.51e-105	326

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Seca10g02640		Pkinase	5.2e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g02640	-		-	gmx:100787268	930.243