Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02561 ATGTTTCCTTTTCCCTGTGTGTCATGCTTCACCACCAAATCGAACACCACAGACTCCTTTCGATTAGAACAACTCTGTCACCGCTTCTCTCTTTCCCAGCTCAAAGCAGCCACAAAAAGTTTCCATCCAAGCTTATCTATAGGTGGAGAAGGTCCATGTCATGTCTACAAAGGCCACCTCAAATCCATAGGAGACGTTGCCATCAAGCACTTCAAGACAAAAAGCTTAGCTGCAGAAATAGAATTCAGGGTCGAAGTCAAAATTCTCTGCCAACTACGCCACCCAAACATCATTCCTCTGATTGGTTTCTGTGAGCACAAAAACAAAAAGTTCACCGTGTATGATTATATCTCCAATGGTAGCCTCTATGATTGTTTGCATGGCACCAATGCTATTCCCATCTCATGGAAACAAAGGCTCCAAATCTGCATTGGCGTGGCTCGTGGACTGCACTACCTTCATTCTGGAACCAAGTTACCTGTCCTCCACCGTGCTGTGAAATCAAAAAACATTCTTTTGGACAAGAATTTGGTGCCCAGAGTGGCAGATTTTGGACTGTGCAAGAAACAGCCCCAAGGGGAATCAACACCAAAGCCACCAAGAATTGAGTTGAGGGAGAATTTTGAGGTTAGTATGGAATACATGGACCCGGAATTTTGTCTTACTGGAAGGCTATCAGAGAGGTCTGATGTGTACTCTTTTGGTGTGGTTCTGTTGGAGGTTTTGTGTAGAAAGGAAGCTTATGTTTTGACCCCAGATGGAGGTGGTTATGAGTATCTTGCTAGATGGGTTTTTGAGGATGAAAGGAGGGGAGTTGCTGAGAAGATTGTTGATCCATCTCTTGTGGGGAAAATAGCACCAGAATGTTGGGAAGTGTTCATTGAGATCGTTCAGAGATGCCTGGTTTCTCCGGGTATAGAGAGGCCAACTGTGGGTGAAGTGGAGGTTGTCCTTGAGAATGCATTGCAGTTGCAGGAAAGAGCAGATGCTGTGAAGGAAGGACCATGA 1008 0.4504 MFPFPCVSCFTTKSNTTDSFRLEQLCHRFSLSQLKAATKSFHPSLSIGGEGPCHVYKGHLKSIGDVAIKHFKTKSLAAEIEFRVEVKILCQLRHPNIIPLIGFCEHKNKKFTVYDYISNGSLYDCLHGTNAIPISWKQRLQICIGVARGLHYLHSGTKLPVLHRAVKSKNILLDKNLVPRVADFGLCKKQPQGESTPKPPRIELRENFEVSMEYMDPEFCLTGRLSERSDVYSFGVVLLEVLCRKEAYVLTPDGGGYEYLARWVFEDERRGVAEKIVDPSLVGKIAPECWEVFIEIVQRCLVSPGIERPTVGEVEVVLENALQLQERADAVKEGP. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02561 335 Gene3D Phosphorylase Kinase; domain 1 7 116 - -
Seca10g02561 335 Pfam Protein tyrosine and serine/threonine kinase 54 261 IPR001245 GO:0004672|GO:0006468
Seca10g02561 335 PANTHER OS07G0166700 PROTEIN 25 325 IPR045272 GO:0004714|GO:0006468
Seca10g02561 335 ProSiteProfiles Protein kinase domain profile. 41 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02561 335 SUPERFAMILY Protein kinase-like (PK-like) 14 314 IPR011009 -
Seca10g02561 335 Gene3D Transferase(Phosphotransferase) domain 1 117 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02561 Seca-Chr10 31975550 31976557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02561 26 334 Receptor kinase-like Gene Family AT5G59700 44.695 3.29e-79 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca10g02561 PK_Tyr_Ser-Thr 3.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02561 - - gmx:100800314 514.227