Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02555 ATGGCTGCTTCTTCCGAGATTAATTGGGACAGGCTAGATAAAACAAAGTTCTATGTCGTTGGAGCTGGACTCTTTACTGGTGTTACTGTGGCACTATACCCAGTCTCTGTTGTGAAGACTAGGCTGCAGGTTGCTTCAAAGGATACCCTGGAGAGAAATGCATTTTCTGTTGTAAAGGGATTACTTAAAACGGATGGCATCCCTGGTTTGTATAAAGGGTTTGGTACGGTCATCACTGGTGCAATTCCTGCCAGAATCATATTCCTCACTGCCCTAGAGACCACAAAGGTGGCTTCCTTCAGGATGCTTGAGCCATTCAAATTATCTGAAACTACCCAGGCTGCCATAGCAAATGGAGTTGCAGGCATGGCATCATCGCTTTTGTCACAAGCTGTGTTTGTTCCAATTGATGTGATTAGCCAAAAATTGATGGTGCAAGGATACTCAGGCCATACCCAGTATAGTGGGGGTTTGGATGTAGCTCGTAAGGTGTTAAGGTCTGAGGGCATCCGAGGATTATATAGAGGGTTTGGTCTATCTGTTATGACTTATTCACCATCTAGTGCTGTATGGTGGGCAAGTTATGGCTCAAGTCAACGCTTCATGTGGAGGTGA 615 0.452 MAASSEINWDRLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVASKDTLERNAFSVVKGLLKTDGIPGLYKGFGTVITGAIPARIIFLTALETTKVASFRMLEPFKLSETTQAAIANGVAGMASSLLSQAVFVPIDVISQKLMVQGYSGHTQYSGGLDVARKVLRSEGIRGLYRGFGLSVMTYSPSSAVWWASYGSSQRFMWR. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02555 204 PRINTS Mitochondrial carrier protein signature 71 89 IPR002067 GO:0055085
Seca10g02555 204 PRINTS Mitochondrial carrier protein signature 27 45 IPR002067 GO:0055085
Seca10g02555 204 PRINTS Mitochondrial carrier protein signature 122 144 IPR002067 GO:0055085
Seca10g02555 204 SUPERFAMILY Mitochondrial carrier 10 203 IPR023395 -
Seca10g02555 204 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 98 IPR018108 -
Seca10g02555 204 Pfam Mitochondrial carrier protein 22 97 IPR018108 -
Seca10g02555 204 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Seca10g02555 204 Gene3D Mitochondrial carrier domain 18 204 IPR023395 -
Seca10g02555 204 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 4 204 - -
Seca10g02555 204 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02555 Seca-Chr10 31863708 31866591 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02555 7 204 Chloroplast and Mitochondria Gene Families AT5G15640 78.283 2.22e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02555 K15121 - gmx:100819519 367.851