Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02549 ATGGCTGCTTCTTCCGAGATTAATTGGGACAGGCTAGATAAAACAAAGTTCTATGTCGTTGGAGCTGGACTCTTTACTGGTGTTACTGTGGCACTATACCCAGTCTCTGTTGTGAAGACTAGGCTGCAGGTTGCTTCAAAGGATACCCTGGAGAGAAATGCATTTTCTGTTGTAAAGGGATTACTTAAAACGGATGGCATCCCTGGTTTGTATAAAGGGTTTGGTACGGTCATCACTGGTGCAATTCCTGCCAGAATCATATTCCTCACTGCCCTAGAGACCACAAAGGTGGCTTCCTTCAGGATGCTTGAGCCATTCAAATTATCTGAAACTACCCAGGCTGCCATAGCAAATGGAGTTGCAGGCATGGCATCATCGCTTTTGTCACAAGCTGTGTTTGTTCCAATTGATGTGATTAGCCAAAAATTGATGGTGCAAGGATACTCAGGCCATACCCAGTATAGTGGGGGTTTGGATGTAGCTCGTAAGGTGTTAAGGTCTGAGGGCATCCGAGGATTATATAGAGGGTTTGGTCTATCTGTTATGACTTATTCACCATCTAGTGCTGTATGGTGGGCAAGTTATGGCTCAAGTCAACGCTTCATGTGGAGGTGA 615 0.452 MAASSEINWDRLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVASKDTLERNAFSVVKGLLKTDGIPGLYKGFGTVITGAIPARIIFLTALETTKVASFRMLEPFKLSETTQAAIANGVAGMASSLLSQAVFVPIDVISQKLMVQGYSGHTQYSGGLDVARKVLRSEGIRGLYRGFGLSVMTYSPSSAVWWASYGSSQRFMWR. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02549 204 PRINTS Mitochondrial carrier protein signature 71 89 IPR002067 GO:0055085
Seca10g02549 204 PRINTS Mitochondrial carrier protein signature 27 45 IPR002067 GO:0055085
Seca10g02549 204 PRINTS Mitochondrial carrier protein signature 122 144 IPR002067 GO:0055085
Seca10g02549 204 SUPERFAMILY Mitochondrial carrier 10 203 IPR023395 -
Seca10g02549 204 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 98 IPR018108 -
Seca10g02549 204 Pfam Mitochondrial carrier protein 22 97 IPR018108 -
Seca10g02549 204 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Seca10g02549 204 Gene3D Mitochondrial carrier domain 18 204 IPR023395 -
Seca10g02549 204 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 4 204 - -
Seca10g02549 204 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02549 Seca-Chr10 31801990 31804873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02549 7 204 Chloroplast and Mitochondria Gene Families AT5G15640 78.283 2.22e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02549 K15121 - gmx:100819519 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02549 10 31801990 31804873 Seca10g02549 10 31801990 31804873 ECH
Seca10g02549 10 31801990 31804873 Seca10g02549 10 31801990 31804873 PCT