Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02547 ATGATGTTCCGTTTCATGCCCATGATTCGATCCTTCCTCATACCCTGTCCATGCATTCTGCTTTTGTTTCTGCTGTCATGCACTTGCTTCCCTTCAACAGAAGCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAAATGGGATATTATAAGCTGGACAGCTGATGGTTATGTTGCTGTTGTTACAATGAACAATTTCCAACAATATCGTCATATCTCAGCACCTGGGTGGTCACTAGGATGGACATGGGCAAAGAAGGAGGTAATATGGAGCATGATGGGAGGGCAGACCACAGAACAAGGGGATTGTTCAAAATTTAAGGGAAATATCCCACATTGCTGTAAAAAGGATCCAACAGTTGTAGATTTACTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGCTGCAAAGGTGGTGTGCTCAGCTCATGGGCACAGGATCCAACTAATGCAGTTGCAGCATTTCAAGTCAGTGTGGGTAGAGCTGGTACCACTAACAAAACTGTCAGAGTGCCAAAAAACTTCACCTTGAAAGCACCAGGACCAGGTTATACATGCGGGCCAGCAAAAATTGTGAAACCCACTCGTTTCATACAGCCAGATAAAAGGAGAGTGACTCAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTTCTAGCTCAGAAAACTCCCACTTGCTGTGTCTCCCTTTCATCTTTCTATAATGATACTGTTGTACCATGCCCAACATGTGCATGTGGCTGCCAGGGCAACTCATCTCAATCAGGGAACTGTATAGATCCAGATTCACCACATTTGGCATCAGTTGTTTCCAACACTGATAAGAATAGTATTACACCTTTGGTTCGATGCACTAATCATATGTGCCCAATCCGAGTTCACTGGCATGTTAAGCTTAACTACAAGGAGTATTGGCGTGTGAAGGTCACTATTACTAATTTCAATTACAGGATGAATTATTCTGATTGGAACTTGGTTGTCCAACACCCAAACTTTGACAATCTGACCCAAATTTTCAGTTTCAACTACGGGGCATTAACTCCCTACGGGTCAATAAATGATACAGCAATGCTGTGGGGAATTAAGTTCTACAATGATTTACTCATGCAAGCTGGCCCTCTTGGTAATGCACAGTCAGAGCTACTTTTCCGAAAGGAAAAGGCAACATTTACTTTTGATAAGGGTTGGGCTTTTCCTCGGAGGCTCTATTTCAATGGTGACAACTGTGTGATGCCACCACCAGATGCTTATCCATGGTTACCTAATACTGGTTCCAAGCAACAGGTTTCCCTGCTTGCTTTGATAATGACTTCCTTGGTAACCTTGGTATTTTATTCATATGCTTGA 1365 0.4227 MMFRFMPMIRSFLIPCPCILLLFLLSCTCFPSTEAYDPLDPNGNITIKWDIISWTADGYVAVVTMNNFQQYRHISAPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDPTNAVAAFQVSVGRAGTTNKTVRVPKNFTLKAPGPGYTCGPAKIVKPTRFIQPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTVVPCPTCACGCQGNSSQSGNCIDPDSPHLASVVSNTDKNSITPLVRCTNHMCPIRVHWHVKLNYKEYWRVKVTITNFNYRMNYSDWNLVVQHPNFDNLTQIFSFNYGALTPYGSINDTAMLWGIKFYNDLLMQAGPLGNAQSELLFRKEKATFTFDKGWAFPRRLYFNGDNCVMPPPDAYPWLPNTGSKQQVSLLALIMTSLVTLVFYSYA. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02547 454 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Seca10g02547 454 PIRSF COBRA 8 454 IPR006918 GO:0010215|GO:0016020
Seca10g02547 454 PANTHER PROTEIN COBRA 24 444 IPR006918 GO:0010215|GO:0016020
Seca10g02547 454 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02547 Seca-Chr10 31762709 31766944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02547 19 450 COBRA Gene Family AT3G02210 78.060 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02547 - - gmx:100783820 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02547 10 31762709 31766944 Seca10g02547 10 31762709 31766944 ECH
Seca10g02546 10 31759072 31761697 Seca10g02547 10 31762709 31766944 PCT
Seca10g02547 10 31762709 31766944 Seca10g02547 10 31762709 31766944 PCT