Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02546 ATGAGGCTTGTCATCTTAGCTCTTTGTGTTCTTGTTCTATTCTCTTATGCGGCTGCTTATGATCCTTTGGATCCAAATGGAAATATAACAATCAAATGGGATGTTATGTCTTGGACACCAGATGGCTATGTGGCTGTGGTAACAATCCACAATTTCCAAATGTTTCGTCACATCATGAATCCTGGGTGGACCTTGGGATGGACATGGGCTAAGAGAGAAGTTATATGGTCCATGATAGGAGCACAAACCACAGAGCAAGGAGACTGCTCTAGATTCAAAGGCAATATACCTCACTGTTGCAAGAAAATTCCCACAGTTGTGGACTTGCTCCCTGGTGTACCTTACAACCAGCAATTCACAAACTGCTGTAAGGGTGGAGTGGTGGCAGCATGGGGCCAAGACCCTTCACAATCTATCTCATCCTTCCAAATTAGTGTAGGACAAGCTGGTACCTCAAACAGGACAGTTAAACTCCCCAAGAATTTCACTCTCTTGGCTCCAGGACCAGGCTATACTTGTGGCCCTGCAAAGGTTGTTCCTTCCACCAATTTCCTTACACCTGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACCTGCACATACTCACAATTTCTAGCAAGGAAAAACCCAAGTTGTTGTGTATCTTTGTCATCCTTCTATAATGAAACCATTACCACTTGTCCCTCTTGTGCCTGTGGCTGCCAGAACAATTATTTCATCACTTTTGGTATGGTATGCAGGAGTGATTCTAAAATTCTCAGCATGCTGGGGGTTCATACTCCAAAGAAAGACAATGAACCATTGCTGCAGTGCACTCATCACATGTGTCCAATCAGGGTCCACTGGCATGTGAAGCTCAACTATAAGGACTATTGGAGAGTCAAGATTGCCATAACAAATTTCAATTACAGGATGAATTACTCTCTCTGGACTCTTGCTATTCAGCATCCAAATCTTAACAACCTCACCCAAGTTTTCAGCTTTGATTACAAGCCTCTTCTTCCTTATGAGTCCATAAATGACACAGGCATGTTCTATGGCATGAAATACTTCAATGATCTACTAATGGAAGCTGGACCAACTGGGAATGTTCAGTCAGAATTGCTTCTTCAGAAAGATAAGAATACATTCACATTCAAGCAAGGATGGGCATTTCCTCGCAAGGTCTATTTTAATGGGGATGAATGCATGCTACCCCCACCTGACACCTACCCATTCCTCCCTAATTCAGCACCTGCAAACCTACTTAGCTTCCAGGCATTGATCTTCTCATTGCTTTTATTGATAGCATTTTGGTGA 1311 0.431 MRLVILALCVLVLFSYAAAYDPLDPNGNITIKWDVMSWTPDGYVAVVTIHNFQMFRHIMNPGWTLGWTWAKREVIWSMIGAQTTEQGDCSRFKGNIPHCCKKIPTVVDLLPGVPYNQQFTNCCKGGVVAAWGQDPSQSISSFQISVGQAGTSNRTVKLPKNFTLLAPGPGYTCGPAKVVPSTNFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITTCPSCACGCQNNYFITFGMVCRSDSKILSMLGVHTPKKDNEPLLQCTHHMCPIRVHWHVKLNYKDYWRVKIAITNFNYRMNYSLWTLAIQHPNLNNLTQVFSFDYKPLLPYESINDTGMFYGMKYFNDLLMEAGPTGNVQSELLLQKDKNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNSAPANLLSFQALIFSLLLLIAFW. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02546 436 PIRSF COBRA 1 436 IPR006918 GO:0010215|GO:0016020
Seca10g02546 436 PANTHER PROTEIN COBRA 7 429 IPR006918 GO:0010215|GO:0016020
Seca10g02546 436 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02546 Seca-Chr10 31759072 31761697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02546 19 433 COBRA Gene Family AT3G29810 67.067 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02546 - - gmx:100798678 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02546 10 31759072 31761697 Seca10g02547 10 31762709 31766944 PCT
Seca10g02546 10 31759072 31761697 Seca10g02546 10 31759072 31761697 PCT