Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02531 ATGGGAAGGGGAAGGGTTCAGCTGAAGCAGATCGAGAACAAGATTAGCCGCCAAGTGACCTTTTCAAAGCGGAGAATGGGTCTGCGAAAGAAAGCGCATGAAATCTCTGTGCTCTGCGATGCTCAAGTAGCATTGATTGTTTTTAACGCTAAAGGCAAACTCTTTGAGTTTTCATCTGAATCCAGCATGGAAAACGTCCTGGAGCGATATGAGAGACATGCCACAGTGCAACTTGATGGAGCTGATAAAGAATCGCAGAGAAACTGGTCCTTGGAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAGGAATTTAAGGAATTTCGTGGGAGATGATCTGGATCCGTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGACACAGCTCTAAAGCGCATCCGAACAAGAAAGAACCTAGTTATGAATGACTCCATCTCAGAGCTGCAGAAAAAGGCAAAGGCGTTGCAGGAGCAAAACAACATGCTATCAAAGAAGATTAAAGAGAAAGAGAAGACAGTTGCTGAACGTCCACCCTGCTGGTCAGAAACAGCCCTAGGCCAAAATTCTTCTGCTTTCAACTTGTGCCCTCCCGAGCTACAATCACCACAAAGACTTGTTCCTTCTTTAACACTCGGATTCTGA 654 0.4557 MGRGRVQLKQIENKISRQVTFSKRRMGLRKKAHEISVLCDAQVALIVFNAKGKLFEFSSESSMENVLERYERHATVQLDGADKESQRNWSLECFKLTGKVEVLERNLRNFVGDDLDPLSLRELQSLEHQLDTALKRIRTRKNLVMNDSISELQKKAKALQEQNNMLSKKIKEKEKTVAERPPCWSETALGQNSSAFNLCPPELQSPQRLVPSLTLGF. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02531 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca10g02531 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca10g02531 217 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Seca10g02531 217 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca10g02531 217 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Seca10g02531 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca10g02531 217 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca10g02531 217 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Seca10g02531 217 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Seca10g02531 217 Coils Coil 142 176 - -
Seca10g02531 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca10g02531 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca10g02531 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca10g02531 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Seca10g02531 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02531 Seca-Chr10 31468007 31488492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02531 1 177 MADS-box Gene Family AT1G26310 61.878 1.06e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca10g02531 K-box 7.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02531 K09264 - gmx:100820188 318.931