Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02530 ATGGGTTCTGTTTGTTGTTGTTTGAGTTTTGATGATTTTGAAGATTATGTAAATCCAAATAGTCATGTATATAGGAACTGCGTGTGCCTTAGTTGCTTGATACAAAACCTTTTGAATGTGTATTCATCAATATTCCATAGAGGGGAAGTGCATTCAATTCCTTCATCTATTCAAGGAACAGCATCTATGACTTCTGCAACATCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTACCCTATGATGCAGAACCCAGGTATTTCCGCTCACAACGTGATGGACTAGTTTCAAGGCGTGAGAAGAGTTCAAGTCATTCAAACGAGGAAACAGAACCTCTAAGAAGTGATGTAGATGTGGATCCAGAATCTTTAAGTTCAGGAGACAAATGGAATGAATGTACTTGTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCACTAAGACTTTCATCAGCAAAATTTACAACTGGAGTTGGACACGTTTATTCATCATCGGAAGAGGAGGATGTCTGTCCAACCTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAATGGATGGAGAGAAGTGACAACTGTCCAGTTTGCGGAAAGGTAATACTTAGTATTTTCTACTTTCTTCTCAGTGAGATGATTTTAAGTTCTTTAGCCATGACATAG 723 0.3831 MGSVCCCLSFDDFEDYVNPNSHVYRNCVCLSCLIQNLLNVYSSIFHRGEVHSIPSSIQGTASMTSATSLDNSLSDMYRSPPRPLPYDAEPRYFRSQRDGLVSRREKSSSHSNEETEPLRSDVDVDPESLSSGDKWNECTCEDGSKEYRSKSSLRLSSAKFTTGVGHVYSSSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVILSIFYFLLSEMILSSLAMT. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02530 240 CDD RING-H2_AIRP1-like 173 221 - -
Seca10g02530 240 MobiDBLite consensus disorder prediction 98 132 - -
Seca10g02530 240 Pfam RING-H2 zinc finger domain 171 217 IPR024766 GO:0008270
Seca10g02530 240 MobiDBLite consensus disorder prediction 98 130 - -
Seca10g02530 240 SMART ring_2 177 217 IPR001841 -
Seca10g02530 240 SUPERFAMILY RING/U-box 172 224 - -
Seca10g02530 240 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Seca10g02530 240 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 223 - -
Seca10g02530 240 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 221 - -
Seca10g02530 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 221 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02530 Seca-Chr10 31456379 31462349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02530 1 221 C3H Transcription Factor Family AT5G15790 59.735 4.12e-92 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02530 - - gmx:100777068 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02530 10 31456379 31462349 Seca10g02530 10 31456379 31462349 ECH