Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02524 ATGGTTCGTCAAACTGATTTAGTTATCATTGGTGTCTCTGTTGGTTTGGCCCTTGGAATTCTGATATCTTGCCTCATATTTTTCGGCATAAGGTGGTACAAGAAACGTGCTCATCTTAGTCGATCCGTGAGTGAGCCTAGTGTAACAACTCTTCCAATACGAACAAATGGACTGGGAACAAGCACTGACTTTAGTGCATCTCTCACTAGTTCCATAGTCACATCAAGATCAGAAAATCTACAAAAAAATTCCCATTTCAGTTGGTGGGGTCATCAAAACAAAGATCGATTTGCTTCAGCATCAGGCATTCTAAAGTATTCATACAAAGAAATTCAAAAGGCCACACAAAATTTCACAACCACCTTGGGAGAAGGATCATTTGGCACGGTTTATAAAGCTACAATGCCTACAGGAGAGGTGGTAGCTGCGAAGGTGCTTGCACCCAATTCCAAACAAGGGGAGAGAGAATTCCAAACAGAGGTGCTTCTGCTAGGAAGACTGCATCACCGGAATCTCGTGAATTTGGTTGGATATTGTGTAGATAAAGGACAGCGCATACTGGTTTATCAGTTCATGAGTAATGGAAGTTTAGCAAATCTTTTATATGGTGAAGAAAAGTTGTTGAGTTGGGATGAAAGGCTGCAAATTGCTATTGATATTTCACACGGAATAGAGTATCTTCATGAAGGAGCAGTCCCTCCTGTCATACATCGCGATTTGAAGTCTGCCAACATATTGCTAGATCATTCAATGAGAGCTAAGGTTGCTGATTTTGGGCTCTCAAAAGAAGAGATCTTTGATGGCCGGAATTCTGGTCTTAAAGGTACATACGGTTACATGGATCCGGCATACATTTCCACAAGCAAGTTAACAACCAAGAGTGACATATACAGCTTTGGTATCATACTGTTTGAGCTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATTAACCTTGCTGCAATGGACCATGATGGTATAGATGAGATACTTGACAAGCAACTTGTGGGAAAATGCAATCTTGTAGAAGTGAGGCAGCTTGCTAAAATTGCACACAAATGCTTGCACAAATCACCTAAGAAACGTCCTTCTATAGGTGAAGTTTCACAGAGTATATCAAGGATAAAGCAAAGGCGACTACGCCATGTGATGGAAGATACCTTGTCATTTGCAAGCAATAACTTTTCCAGAGCTGTGAGTCGATTAGAAGATCGACAGGTTGAATTAAATAGGATAGCCACCACGAACCTAACAGAAACTGTATGA 1275 0.4086 MVRQTDLVIIGVSVGLALGILISCLIFFGIRWYKKRAHLSRSVSEPSVTTLPIRTNGLGTSTDFSASLTSSIVTSRSENLQKNSHFSWWGHQNKDRFASASGILKYSYKEIQKATQNFTTTLGEGSFGTVYKATMPTGEVVAAKVLAPNSKQGEREFQTEVLLLGRLHHRNLVNLVGYCVDKGQRILVYQFMSNGSLANLLYGEEKLLSWDERLQIAIDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTTKSDIYSFGIILFELITAIHPHQNLMEYINLAAMDHDGIDEILDKQLVGKCNLVEVRQLAKIAHKCLHKSPKKRPSIGEVSQSISRIKQRRLRHVMEDTLSFASNNFSRAVSRLEDRQVELNRIATTNLTETV. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02524 424 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02524 424 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 401 - -
Seca10g02524 424 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Seca10g02524 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Seca10g02524 424 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 90 191 - -
Seca10g02524 424 Gene3D Phosphorylase Kinase; domain 1 79 191 - -
Seca10g02524 424 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Seca10g02524 424 SUPERFAMILY Protein kinase-like (PK-like) 90 373 IPR011009 -
Seca10g02524 424 ProSiteProfiles Protein kinase domain profile. 116 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02524 424 Gene3D Transferase(Phosphotransferase) domain 1 192 399 - -
Seca10g02524 424 PANTHER OS01G0750732 PROTEIN 11 380 - -
Seca10g02524 424 CDD STKc_IRAK 122 378 - -
Seca10g02524 424 Pfam Protein kinase domain 120 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02524 Seca-Chr10 31348092 31353447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02524 8 380 Receptor kinase-like Gene Family AT1G79620 37.596 5.59e-72 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Seca10g02524 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02524 - - gmx:100819995 768.074