Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02497 ATGACAATTGGAAGTCTTGCACCTAAGGCAGAGAGGACAAGATCAAGGAAGAACAAGTCAGTTGTTGATGAGAATGCGCCTTTGATTCCTAAGACTCAGGAGACTGATGCTGGGTTTGATGATTTTAATGGAGCTTCATTTTCTGGAGCTGTTTTCAACTTGTCCACCACAATTATTGGTGCTGGGATCATGGGCTTGCCTGCATGTGTGAAAAAGTTGGGGATGGTGCCTGGTCTTCTTATTATAATCTTAACAGCATTCTTGACAGAGAAGTCAATTGAGTTCATGATTAGGTTTTCCAGGGCTGGAAATCTTTCTTCTTATGGAAGTCTCATGGGGGATGCCTTTGGAAAATATGGAAAAGCTCTGTTGGAGATATGTGTTGTAATCAATAACATTGGTGTGCTGATAATTTACATGATTATTATTGGTGATGTGATTTCTGGAACATCTTCTAGTGGAATTCATCACTCTGGTGTCCTTGAAGGATGGTTTGGTGTCCATTGGTGGACTGGGCGTACATTTGTTCTTGTTGTTATAACATTTGCTGTATTTGCACCTTTGGTCAGCTTTAAGCGAATTGATTCATTGAGATTCACATCTGCATTATCAGTTGGACTAGCAGTTGTTTTTCTTGTCATTGCTGTGGGAATCTCAATTGTCAAGATTATAAGTGGAGGCATTGAGATGCCCAGACTCTTCCCGATCATTACTGATGCAGTGTCAGTTTTTGAATTGTTCACTGTGGTTCCTGTGCTTGTGACCGCCTATATCTGCCACTACAATGTTCACAGCATAGATAATGAACTTGAGGACTCTTCATGGATGCATGGGGTTGTACGTACCTCCCTTGCTCTGTGCTCTTCAGTGTACTTACTGACAAGCTTCTTTGGGTTCCTCCTATTTGGTGAAGAAACTCTTGATGACGTGCTTGCCAATTTTGATACTGATCTTGGAATTCCTTTTGGTTCTGTGCTTAATGATGCTGTTCGTTTTAGCTATGCTGCACATCTTGTGCTTGTATTTCCAGTAGTCTTCTATGCAGTGAGGGTCAACATAGATAGTCTCATATTTTCTTCATCAAGGCCTTTGGTTCTAGACAACTTCAGATTTGCATCAATTACTATTGTCCTTGTTGGCATTATCTTCCTGGGAGCAAATTTCATACCAAGCATTTGGGATATTTTCCAGTTCACTGGAGCAACAGCTGCTGTTTGTGTAGGATTCATATTTCCAGCTGCCGTTACTCTTAGGGACCGGTACAACATAGCAACTAAAAGAGACAAGATTCTATCTGTCTTTATGATAGTCCTGGCAGTCTTGTCAAATGCTGTGGCTATATATAGTGATGCCTATGCCTTGATCAAGAAGAATAAAACTTAA 1383 0.4071 MTIGSLAPKAERTRSRKNKSVVDENAPLIPKTQETDAGFDDFNGASFSGAVFNLSTTIIGAGIMGLPACVKKLGMVPGLLIIILTAFLTEKSIEFMIRFSRAGNLSSYGSLMGDAFGKYGKALLEICVVINNIGVLIIYMIIIGDVISGTSSSGIHHSGVLEGWFGVHWWTGRTFVLVVITFAVFAPLVSFKRIDSLRFTSALSVGLAVVFLVIAVGISIVKIISGGIEMPRLFPIITDAVSVFELFTVVPVLVTAYICHYNVHSIDNELEDSSWMHGVVRTSLALCSSVYLLTSFFGFLLFGEETLDDVLANFDTDLGIPFGSVLNDAVRFSYAAHLVLVFPVVFYAVRVNIDSLIFSSSRPLVLDNFRFASITIVLVGIIFLGANFIPSIWDIFQFTGATAAVCVGFIFPAAVTLRDRYNIATKRDKILSVFMIVLAVLSNAVAIYSDAYALIKKNKT. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02497 460 Pfam Transmembrane amino acid transporter protein 45 448 IPR013057 -
Seca10g02497 460 PANTHER AMINO ACID TRANSPORTER 43 442 - -
Seca10g02497 460 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02497 Seca-Chr10 30889199 30892634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02497 3 458 Amino Acid or Auxin Permease AAAP Family AT3G30390 66.009 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02497 K14207 - gmx:100791286 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02497 10 30889199 30892634 Seca10g02497 10 30889199 30892634 ECH
Seca10g02497 10 30889199 30892634 Seca10g02497 10 30889199 30892634 PCT