Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02494 ATGTCACGTTATTCCTCTAATCCCTTCGCAACCACTCATTCCGATTCCGATTCCGACTCAGTGAGTTGTTTCGTCACCGATCTCTTCGAAAATCGCTTATCCGTGCGTTCTCGCCCTTGTTCCTGCGATGACATAAACCCCTTCTCCGGGGTCGTTTGCGATCTTCACCACCGCGAACGAGGGTTAGGGTTAGGGATAGGGTTTGGCGATGAAATTGAAACCCAAAATAACGATCACAACGATGGGGTTTTTGATTTTTCGGTGGGTGGTGATTCGGGTGGGCTTAGGGTTGTCGGGTTCGGTTCCGATTCCGATTCGAGTAGCGAGGATGGCGAGTTCGGTTCTGGGAGGAACGGTGATGAGAGGGTTAATGGTGGATTTGATGATTTTGATGTTCGATTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACCCTCAATGAATGGGAGGAGGTTGAAGAGAGGGTGAATGAAAGAGAAGATTCTAACTTGGTGATTGATGAGGATGAGGATGAGGATGAGGTTGAGGTTGATGGTCAATCAGTGGCTTCTGGTTTCGAGGAGGAGGAACCTGGTGAAGAGGCGCTGAGGTACCTGGAATGGGAAATTCTCTTGGCTGTTAACAATTTGGAGAGGAATGCTGGGTTGGAACATGATGATGAGAACTTTGCTGATTCATATTTAGCGATTCAAGATGGCTATATATCCACATCTGATTACGACATACTTTTTGGGCAGTTTCTGGAGAATGAGAGTGCCTTGAAGGGTAGCCCTCCAGCTGCCAAGAGTTTTGTGGAGAATCTCCCTCTGGTGGAATTGACAGAGGAGGAGTTGCGGGGTAAGGAGGTGGCTTGTGCCATTTGCAAAGATGAGATCATGTTGGAGGAGAAGGTGAGGAGGCTCCCTTGCTCCCATTGTTATCATGGAGATTGCATTTTGCCATGGTTGAGTATTCGCAACACATGCCCTGTTTGCCGGTTTGAGTTGCCCACAGATGATCCTGATTATGAGCAGAGTAAGTTCCACAGTGCCGCACGAGGTCTGTTGGAGCTTGCAGCACAGATGCATTTTTGA 1077 0.4828 MSRYSSNPFATTHSDSDSDSVSCFVTDLFENRLSVRSRPCSCDDINPFSGVVCDLHHRERGLGLGIGFGDEIETQNNDHNDGVFDFSVGGDSGGLRVVGFGSDSDSSSEDGEFGSGRNGDERVNGGFDDFDVRLCWDSLCLEDQRTLNEWEEVEERVNEREDSNLVIDEDEDEDEVEVDGQSVASGFEEEEPGEEALRYLEWEILLAVNNLERNAGLEHDDENFADSYLAIQDGYISTSDYDILFGQFLENESALKGSPPAAKSFVENLPLVELTEEELRGKEVACAICKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQSKFHSAARGLLELAAQMHF. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02494 358 ProSiteProfiles Zinc finger RING-type profile. 286 327 IPR001841 -
Seca10g02494 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 163 331 - -
Seca10g02494 358 MobiDBLite consensus disorder prediction 1 20 - -
Seca10g02494 358 Pfam Ring finger domain 286 327 IPR001841 -
Seca10g02494 358 SMART ring_2 286 326 IPR001841 -
Seca10g02494 358 FunFam E3 ubiquitin-protein ligase RING1-like 247 333 - -
Seca10g02494 358 MobiDBLite consensus disorder prediction 99 122 - -
Seca10g02494 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 333 IPR013083 -
Seca10g02494 358 SUPERFAMILY RING/U-box 274 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02494 Seca-Chr10 30860821 30861897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02494 90 356 C3H Transcription Factor Family AT3G02340 40.484 1.25e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02494 - - gmx:100812037 454.521