Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02488 ATGGCTGAGCTAATTCCTTACAGTGTAACTGCAAACCTCGTTAATAATTTGGCTTCATCAGCCGTCAGTGAATTTGGAAAGACTAATATTGATGTGATAGATGACTTGGATGAGCTCAAAAAAACAATTGAATCCATCCAACGTGTGCTCCCTGCTGTTGAGGAGGTGCAAGAGAAAGAAGGTGACAATGCTGTACAAGTACAACTCTGGCTAACAAGGCTTAAAGATGTACTTTATGCTGCTGACGACTTGGTTGATGACATTGCTACTGAAAACTTGAGGTTAAAAAAGGATAGTTCTCTCTGGAAAAAGGTACGCAATCGCATTTCATTCTCATTTGGAACTATTTTTCGACATCAAATGGTTCATGAAATAAAGAAGATACGAAATGATGTTGATTCTGTAGCGAGGGATATGTTGAATTTAGATGTGTCTCGGTTGAATTTATACCAAAGTCATGAGAGTACACCGAGGGAAAAAACTTCTTTTGTGTTAGAATCAAATATCATTGGAAGGGAGGATAGCATTAAAGAGATTTTAAGCCAGTTGATGCAACCGCATGGAAAGGAAAATGTTTCCTTGATCGGTATTGTTGGCATCGGTGGTATAGGCAAGACAACTATAGCTGAAATGGTTTACATTGATGACCAAGTTAAAGGGTTCTTTGAAAAGCGAGCGTGGGTGTCTGTTTCTGATAATTCTGATGTCGAAACTACTGTGAAGAAAATTTTAGAGTCATTAACCAGTAGCAAAAGCAATGATCAAGAATCATTTGCAGAATTACTAAATAAGCTTGATGAAAATTTAAATGGCAAGAAGTATTTCTTAGTGTTGGATGACATCTGGAATGAGAGTGATGAAAAATGGAGTCAATTGATAACTTGTTTGAACTGTGGGGCTCAAGGTAGTAAGATATTAGTCACAACTTGTAGTAAAATTGTAGCTGAAGTAATGGGAGTGAGCTTTCCATTTTATTTGCAAGGCTTGACTGAAGAACAGTCTTGGGGTTTGTTTAAGAAGTTAGTATTTAAAGATGATGACTCTGTAAGGTACCCTAAACTAGAATCAGTTGGTAAAAAAATTGCAACAGAGTGTAGAGGAGTTCCCCAGATAATTGAAACAGTAGCAGACATGTTGTCAAAAATTGAATATGAAGAAACAAAATGGATTCAATTTTTGGAAGGTATGCATAAAGACCCGAAGATTCCCATGCCTGCTCTAAAACTCAGTTACCAGCATTTGTCACCTGAATTGAAACAATGTTTTGCTTATTGTTGCATATATCCTAAGGAATGGGAAATTGAAAAGAATGTGTTGATTCAATTATGGATGGCACTAGGTTACCTTGAATGTTTCAATGAAGAGCAGCAAATGGAAGATGTGGGCAATAAGTATGTTGAGACTCTTCTAAAGAGGTCATTTTTTCAAGAGAAAAAATTTGATGAATTTGATAATCTAGTTAGTTTCAAAATGCATGATTTGATGCGTGATCTTGCATTGCTGGTAGCTGGTAATGATTGTTACTTCAATGGTAACAGCAGAGCCAATAAACCCATGCACATGCGCATCTCATTGGAATCTAATGCCATCGATTTGTTGGGCTCATTAGATGCAAGTAGGCTGCAAACATTTTTTCTGCAGAAGGCAGGTTATCGAGAGATTTCTCAGTTGACGGGAGAGCTGTCTGTTATTATGAGTTTCAAATCCTTACGTGTCTTGAAACTGTCCCATTATCCTTTAAAGAAGTTGCCAGATTCAATTGAAAAATTAAAGCATTTAAGATATCTTGACTTATCTTGGTGTGTGAAACTAGCAAGTCTTCCCAAATCCATAGGCAATCTTGTTAACTTACAAACATTGAAATTGACCGGTTGTGAGGCACTTGAATTTCCTACCGAAATTGTCACAGAGTTAAAAAATTTGAGACACCTTGAGATTCATCGTTGTAAAGCCTTTGAGGACATGATGCCAGCTGGACTGGGGAAGTTGTCTTCATTGCAATCCTTATCAAGCTTTTACGTGGTGGATGCAGATCAGAACAAGAAAGCTGGCAAACTGAATGAATTACAGAACTTAAATAACCTGAGAGGCAATTTAGAGATTAACACACTTGGTCTGGTAAGCAATGTGCTGCAGGAATCAAAGGAAGTAAACTTGAAAGAGAAGAAACTCCTTGAGACCTTGGATTTAAATTGGGGGTGTCGGAACATTAACAATGACAGCTCACAACTACTTGAAAACCTTTGTCCCCACCAGCATCTAAAAAGATTGAATGTGTGGTGGTATCCTGGTGTGAGTTTTTGTAAATGGCTTTCTTCAATCATGGAACTTTCTTACATCTCTCTATTTGGCTTTGATAATTGTGAATATCTCCCACCACTAGAGCTTCTCCCAAACCTCAAGTCTCTTGAGATAGGTTCTATGACAGCATTGGAGTACATACAACTTCAAAGGGGGTCATCAACTGCAGCAAAATTCTTCCCATCTTTGAAGAGGCTCAAGTTTAGTGATTGTGAGAAATTCCAGCATCTCTCTCTGGCTCCATTTTCTTGTCTCTCTCAATTAATAATCAACAAATGCCCAAAGTTGAACTGCATGCCTACTTTTCCAGACGTTGAGAAGTTGCAATTGTGTGAATCAGCTGTGGCGAAGCCATTGAGAGAGACACTGGACATAGCGTCATCCTCGTCCACTCCTCTTTCCATACTCAAGTCGCTGAAAATAGAAGGCAAACTTTTGGATATAAAAGATTTGCCATCTCAATGGGTAAGAAGCCTTACTTCTCTTGAGTATCTTGAAATTGGGGGCGTTGAGAAATTAGAAATTTGGTTTCTGGATCTGGACTGCTTCCCTTCTCTGCGGAAAATCATGGTATATGATTGTGAATTACAAGCATTGCCGAATGTGATGTGTAACTCGCTATCACTTAAACATATCAAGTTAATGGGATGCCGTAAATTGGCGTCTTTGCCAGAAGGAATGCCTCGCCTTACCAACTTAGCCATACTAGAAATCTGGGATTGTCCCCTCTTATTTGAGCGATGCCAGAGGGAAACAGGTGCGGATTGGCCCAAAATTTCTCATGTCCAGACCATTGTACTGAAGCAAAATGACAAGTTTTATAGGTACTGCTACCCTTATATTTCATTTTCTAATAAAGACTCTTTAGCTAGTTTCATTTTACCCTTAAACATTCTCTTGTTTTTATTTTTTTTATAA 3219 0.3815 MAELIPYSVTANLVNNLASSAVSEFGKTNIDVIDDLDELKKTIESIQRVLPAVEEVQEKEGDNAVQVQLWLTRLKDVLYAADDLVDDIATENLRLKKDSSLWKKVRNRISFSFGTIFRHQMVHEIKKIRNDVDSVARDMLNLDVSRLNLYQSHESTPREKTSFVLESNIIGREDSIKEILSQLMQPHGKENVSLIGIVGIGGIGKTTIAEMVYIDDQVKGFFEKRAWVSVSDNSDVETTVKKILESLTSSKSNDQESFAELLNKLDENLNGKKYFLVLDDIWNESDEKWSQLITCLNCGAQGSKILVTTCSKIVAEVMGVSFPFYLQGLTEEQSWGLFKKLVFKDDDSVRYPKLESVGKKIATECRGVPQIIETVADMLSKIEYEETKWIQFLEGMHKDPKIPMPALKLSYQHLSPELKQCFAYCCIYPKEWEIEKNVLIQLWMALGYLECFNEEQQMEDVGNKYVETLLKRSFFQEKKFDEFDNLVSFKMHDLMRDLALLVAGNDCYFNGNSRANKPMHMRISLESNAIDLLGSLDASRLQTFFLQKAGYREISQLTGELSVIMSFKSLRVLKLSHYPLKKLPDSIEKLKHLRYLDLSWCVKLASLPKSIGNLVNLQTLKLTGCEALEFPTEIVTELKNLRHLEIHRCKAFEDMMPAGLGKLSSLQSLSSFYVVDADQNKKAGKLNELQNLNNLRGNLEINTLGLVSNVLQESKEVNLKEKKLLETLDLNWGCRNINNDSSQLLENLCPHQHLKRLNVWWYPGVSFCKWLSSIMELSYISLFGFDNCEYLPPLELLPNLKSLEIGSMTALEYIQLQRGSSTAAKFFPSLKRLKFSDCEKFQHLSLAPFSCLSQLIINKCPKLNCMPTFPDVEKLQLCESAVAKPLRETLDIASSSSTPLSILKSLKIEGKLLDIKDLPSQWVRSLTSLEYLEIGGVEKLEIWFLDLDCFPSLRKIMVYDCELQALPNVMCNSLSLKHIKLMGCRKLASLPEGMPRLTNLAILEIWDCPLLFERCQRETGADWPKISHVQTIVLKQNDKFYRYCYPYISFSNKDSLASFILPLNILLFLFFL. 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02488 1072 Gene3D Ribonuclease Inhibitor 537 889 IPR032675 -
Seca10g02488 1072 Gene3D - 416 500 IPR036388 -
Seca10g02488 1072 FunFam Probable disease resistance protein At1g61300 151 322 - -
Seca10g02488 1072 PANTHER DISEASE RESISTANCE PROTEIN RP 36 973 IPR044974 GO:0006952
Seca10g02488 1072 Gene3D - 328 415 IPR042197 -
Seca10g02488 1072 PRINTS Disease resistance protein signature 588 604 - -
Seca10g02488 1072 PRINTS Disease resistance protein signature 194 209 - -
Seca10g02488 1072 PRINTS Disease resistance protein signature 365 379 - -
Seca10g02488 1072 PRINTS Disease resistance protein signature 268 282 - -
Seca10g02488 1072 Pfam NB-ARC domain 172 397 IPR002182 GO:0043531
Seca10g02488 1072 Pfam Rx N-terminal domain 12 99 IPR041118 -
Seca10g02488 1072 Gene3D - 153 321 IPR027417 -
Seca10g02488 1072 Coils Coil 36 56 - -
Seca10g02488 1072 Gene3D Ribonuclease Inhibitor 890 1069 IPR032675 -
Seca10g02488 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 425 IPR027417 -
Seca10g02488 1072 Gene3D - 11 131 - -
Seca10g02488 1072 FunFam Probable disease resistance protein At1g63360 411 501 - -
Seca10g02488 1072 SUPERFAMILY L domain-like 476 1027 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02488 Seca-Chr10 30701902 30705147 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02488 191 449 WRKY Transcription Factor Family AT5G45050 25.385 6.31e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02488 - - mtr:25495499 988.023