Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02483 ATGGCTGAGCTAATTCCTTACAGTGTAGCTGCAAGCCTCATTAATAAATTGACATCATTAATCGCCAGTGAATTTGGAATGACGTATGGTATCAAAGATGATTTGGAATTGCTCAAGAATTCAATTGTTACTATCCAACATAAGCTCCCTGATGCTGAAAAAATGCAAGAACAAGACCGTGATGTACAAGGCCGGATAATAATACAAGGCTGGATAACAAGGTTCAAAGATGCACTTCATGCTGCAGATGACTTGATCGATGAGATTGCTACTGAAAATTTGCGACTCAAACTGGGTGGTGGTGTGGAAATTGTGAAAAAGGTACGCAATTTCTTTTCATCCTTTGGTCATGATCAAATGGCTAACAAAGTAAAGAAGATTGATTCTGTAGCGAGTGATATGTCTAAATTGATGGATCAAATGGTAAATATGCCTCAGTTGAATTTAAGCCAAACACTTGAAAATGCACGGAGTACAACTTCTTTTGTGTTTGAATCATCTATCTTTGGAAGAGAACTTGACAAGAAAATTATTTTAAGCCGGTTGATGGAACCGCTTGGAAATGAAAATGTTTCCTTGATTGGTATTGTTGGTATTGGTGGTATAGGCAAGACATCTCTTGCTCTGTCAGTATACAATGATGAACAAGTCAAGGAGTTCTTTAACAAAAAGCAAATGTGGGTGTGGGTTTCTGATAATTTTGATGTCGAAACTATTGTGAAGAAAATGTTAGAACAATTAACGATTGATAGTGGAGGCAATCGTCAAGGATCATTGGAAGACTTAAATGGCAGGAGGTATTTGTTAGTGTTGGATGATATCTGGAACGAAAATAAAGAAACATGGGATGATTTGAGAAGTGTTTTGATGTGTGGGGCTCCCGGTAGTCGGATTTTAGTGACAACTCGTAGTAAAATTGTACCCCAAGTAATGGGAGCTAGTTTTTTATTTCGTTTGGAAGGCTTGAGTGAAGAAGAGTCTTGGAGTTTGTTTAAGAAGTTAGTATTTAGAGATCATGACTCAGTAATGTACCATAAACTAGAATCAGTTGGTAGAAAAATTGTAAGAAAGTGTAGAGGAGTTCCACTGTCAATTAGAACAGCTGCAGGCGCATTACGATCTAGAAATGCAGAAGTAGATTGGATTCTATTTTTAGAGCGTATGAATGAAGACAGCAATATTGTCACACCTGCTCTAAAACTCAGTTACCAATTTTTGTCACCTGAATTGAAACAGTGCTTTGCTTATTGTTGCATATATCCCAATGGATGGGAAATTGAAAAGAATGAACTGATTCAATTATGGATGGCCCAAGGTTATCTTGAATGCTTAGATGATAAGCACCAAATGGAAGATGTGGGCAATGAATTTGTTGAGACTCTTCTTAAGAAGTCAATTTTTCAAGATGCAAAAATTGATGAATATGGTAACCGAGTTAGTGTGAAAATGCACGATTTGATGCATGATCTTGCATTGCTGGTAGCTGGGGGAGATTATTACTTGGATAGTCGGGGAGAAGTCAACAAACCCATGCACATGTGCATCTCATATGAATCTAACACCATGGATTCGTTGGGTTCATTAGAAGCAAGTAGGCTGCGAACATTTTTTCTGCGGCAGCCAAATGATGAAGAGGAGAGTGCTCAGTTGATGAGAGAATTGCCTGGTTTTTCAAGTTTCAAATGCTTACGCGTCTTGAATCTGTCCCGTTCTTCTTTAAAGACGTTGTCAAATTCAATTGATAAATTGACACATTTAAGATATCTTGACTTATCTTGGTGTGTAGAACTAGTAAGTCTTCCCAAATCCATAGGCAATCTTGTTAACTTGCAGACATTGAAATTGACTGGTTGTGAGGCACTCGAATTTTCTACCCAAGTTGTCACAAAGTTAATCAGTTTGAGGCACCTTGAGATTCATCGTTGTAAAGCCTTTGAGGACATGATGCCAGCTGGACTGGGGAACTTGTCTTCATTGCAATCCTTATCAAGCTTCAACGTGGTGGATCATGCAGATCATCATCATCAGAAGAAAGCTGGCAAACTGAATGAATTACAGAACTTAAATAATCTGAGGGGCAGTTTAGAGATTAACGCACTTGGTCTGGTAAGTGACGTGATGTCGGAATCAAAGGAAGTAAACTTGAAAGAGAAGAAACTCCTTCAGTCCTTGAATTTGAATTGGGGGCATCTGATTCTGGACAATAAGGGGGAGGATAGCTTCCAATTATTAGAAAACCTTTGTCCCCATCAAAATCTGAAAAGATTGAACGTGTGGGGGTATCCGGGTTCGAGCTTCCCTGATTGGCTTTCTTCAATCATAAATCTTTCTTACATTACTCTCTTTGGCTTTGATGATTGCAAATATCTCCCACCGTTACAGCAACTGCCATACCTCAAGTCTCTTGAGATAGGTTCTATGAAAGTATTGGAGTGCATATCTTATAAAGCGGTGTCTCCTACTCCTACAGCAGCAGCAGCATTCTTCCCATCTTTGAAGAGGCTCAAGTTAAGTGGCTGTGAGAAACTCCAGGGATGGGGGCGGATGGAAGATGATCTCTCCCTGCCTCCCTTTCCTCATCTCTCTCAATTAATAATCAATAAGTGCCCAAAGTTGACTCGCATGCCTACTTTTCCAGATGTTGAGGAATTGCAATTGTGTGAATCCATGGTGGAACCATTGAAAAAAACACTGGACACATCCTCCTCCTCCTCCTCCGCTCCTCTTTCCAAGCTCAGTTCGCTAAAGATAGAAGGCAAACTTCTGGACACAAGAGATTTGCCATCTCAGTGGATACCGAACCTTACATCTCTCAAGTATCTTGAAATTGGAGATGTTGACAACTTAGAAATTTGGTTTAAGGACAGCCTCCCTTCTCTGCAAAAAATCGTGATATATAACTGTGACTTACAGGCTTTGCCTGATGGGATGTGTAACTCGCAGTCACTTGAGCATATCAAGATCATGGGATGCCGTTATTTGTCGTCGTTGCCAAAAGGAATGGCTGGCCTTACCAAATTACTCACACTGGAAATCTGGGGTTGTCCCCTCTTAGTTGAACGATGCCAGACGGGAACAGGAGCAGATTGGCCCAAAATTTCTCATGTGAAAAACATAATTTTGGTGTAA 3129 0.3988 MAELIPYSVAASLINKLTSLIASEFGMTYGIKDDLELLKNSIVTIQHKLPDAEKMQEQDRDVQGRIIIQGWITRFKDALHAADDLIDEIATENLRLKLGGGVEIVKKVRNFFSSFGHDQMANKVKKIDSVASDMSKLMDQMVNMPQLNLSQTLENARSTTSFVFESSIFGRELDKKIILSRLMEPLGNENVSLIGIVGIGGIGKTSLALSVYNDEQVKEFFNKKQMWVWVSDNFDVETIVKKMLEQLTIDSGGNRQGSLEDLNGRRYLLVLDDIWNENKETWDDLRSVLMCGAPGSRILVTTRSKIVPQVMGASFLFRLEGLSEEESWSLFKKLVFRDHDSVMYHKLESVGRKIVRKCRGVPLSIRTAAGALRSRNAEVDWILFLERMNEDSNIVTPALKLSYQFLSPELKQCFAYCCIYPNGWEIEKNELIQLWMAQGYLECLDDKHQMEDVGNEFVETLLKKSIFQDAKIDEYGNRVSVKMHDLMHDLALLVAGGDYYLDSRGEVNKPMHMCISYESNTMDSLGSLEASRLRTFFLRQPNDEEESAQLMRELPGFSSFKCLRVLNLSRSSLKTLSNSIDKLTHLRYLDLSWCVELVSLPKSIGNLVNLQTLKLTGCEALEFSTQVVTKLISLRHLEIHRCKAFEDMMPAGLGNLSSLQSLSSFNVVDHADHHHQKKAGKLNELQNLNNLRGSLEINALGLVSDVMSESKEVNLKEKKLLQSLNLNWGHLILDNKGEDSFQLLENLCPHQNLKRLNVWGYPGSSFPDWLSSIINLSYITLFGFDDCKYLPPLQQLPYLKSLEIGSMKVLECISYKAVSPTPTAAAAFFPSLKRLKLSGCEKLQGWGRMEDDLSLPPFPHLSQLIINKCPKLTRMPTFPDVEELQLCESMVEPLKKTLDTSSSSSSAPLSKLSSLKIEGKLLDTRDLPSQWIPNLTSLKYLEIGDVDNLEIWFKDSLPSLQKIVIYNCDLQALPDGMCNSQSLEHIKIMGCRYLSSLPKGMAGLTKLLTLEIWGCPLLVERCQTGTGADWPKISHVKNIILV. 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02483 1042 Gene3D - 10 131 - -
Seca10g02483 1042 Gene3D Ribonuclease Inhibitor 893 1026 IPR032675 -
Seca10g02483 1042 PRINTS Disease resistance protein signature 261 275 - -
Seca10g02483 1042 PRINTS Disease resistance protein signature 605 621 - -
Seca10g02483 1042 PRINTS Disease resistance protein signature 358 372 - -
Seca10g02483 1042 PRINTS Disease resistance protein signature 193 208 - -
Seca10g02483 1042 Gene3D Ribonuclease Inhibitor 679 890 IPR032675 -
Seca10g02483 1042 Gene3D Ribonuclease Inhibitor 515 678 IPR032675 -
Seca10g02483 1042 SUPERFAMILY L domain-like 467 1034 - -
Seca10g02483 1042 PANTHER DISEASE RESISTANCE PROTEIN RP 64 869 IPR044974 GO:0006952
Seca10g02483 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 417 IPR027417 -
Seca10g02483 1042 Gene3D - 150 314 IPR027417 -
Seca10g02483 1042 Gene3D - 321 407 IPR042197 -
Seca10g02483 1042 Pfam Rx N-terminal domain 11 97 IPR041118 -
Seca10g02483 1042 Gene3D - 408 492 IPR036388 -
Seca10g02483 1042 FunFam Probable disease resistance protein At1g63360 403 493 - -
Seca10g02483 1042 Pfam NB-ARC domain 178 393 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02483 Seca-Chr10 30593830 30597140 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02483 190 491 WRKY Transcription Factor Family AT5G45050 25.466 9.41e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02483 - - mtr:25495499 1033.86