Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02477 ATGTCAATGACCTTGCTCACCAACTTGGAGCGCATTGAGACACTACTCAATGCGCCAAGCACCATTAGTGCATCCAATAAAAGATGGCACTCTGCCTTCATGACCATCTATTGTTCCCGAGCCCTGATGTCACACTTCACTCTCAACAAAAACAACATTCCAGAAAAACCTTCTCTACCTTTCACTGTCATTGATTTCAATTCACACCAATCCTTCGCTATTGATCAAGCGGGTCTCACCGAGATTGTCAAAGATAAAAACGTTCACAGACTTCAGAGATATGGTGGGATTGAAGGGGTGGCTTCAGCCCTTGAAACCAACGTTGAGTTTGGTATCAGAGGTGATGATGCTGAAGGAATTTCACGTAGACAACAAGTGTTTGGTTCCAACACTTACAACAAACCCCCTTCCAAAGGCTTCTTTCATTTCGTGGTGGAAGCTTTTAAGGATGTCACAATTCTCATCCTTTTGGTTTGTGCAGCTCTTTCCCTTGGCTTTGGCATCAAGGAGCATGGACTCAAAGAAGGTTGGTATGATGGTGGCAGCATTTTTCTAGCTGTGTTTATTGTTATTTCCATGTCTTCTATAAGCAACTTCAGGCAGAACAGACAATTTGATAAGTTGTCTCAAGTTAGCAGTGATATACAAATTGATGTTGTGAGAAGTGGGCGTCGCCAACAAATCTCAATCTTTGAAATTGTGGTTGGTGATGTTGTTTGTTTGAAGATTGGAGATCAAGTCCCTGCTGATGGATTATTCATAGATGGACATTCATTGAGAGTGGATGAATCAAGCATGACAGGGGAGAGTGATCATGTTGAGATTAATAGGAACCATCATCCTTTCTTGTTCTCTGGTACAAAGGTTGCTGATGGGTATGCTAAGATGCTTGTTACTTCAGTTGGTATGAACACAACATGGGGTGAAATGATGAGTTCAATAAGCCGTGATATTGATGAGGAAACTCCTTTGCAATCAAGGCTGAACAAGCTTACATCATCTATTGGGAAGGTTGGTTTGATTGTGGCTTTTCTTGTTCTTGTTGTTTTGTTGGTTCGTTACTTCACAGGGAACACAAAGGATGAGAATGGGGTTAAAGAGTTCAATGGGAGCAAGACTAAGTTTGATGATATCATGAATGCAGTTGTGGGAATTGTTGCTGATGCAGTTACTATTGTTGTTGTTGCAATCCCTGAGGGTCTTCCATTAGCTGTGACTCTGACCTTGGCTTATTCAATGAAGAAAATGATGGCTGATCAAGCAATGGTGAGGAAGCTCTCTGCATGTGAGACTATGGGGTCTGCTACCACTATTTGTACTGATAAAACAGGCACACTCACATTGAACCAGATGAAGGTGACCAAGTTTTGGCTTGGCCTAGAACCTGTGGCAGAGGGTGCCTACTCAATGGTTGCTCCATTTGTTCTTCAACTGATCCAGGAAGGAGTGGCTCTCAACACAACTGGTGGTGTGCACAAGTCTAATTCAGGTTCTGAATTTGAGTTTTCAGGTAGTCCCACAGAAAAAGCAATCCTATCATGGGCTGTCTTGGAATTGAACATGGATATGGAGAACTTGACAAAAAGCTGTTCTATCATTCAAGTTGAGACATTCAACTCAAAGAAGAAAAGAAGTGGGGTTTTGTTGAGAAGGAAAGCAGACAACACAGTTAATGCACACTGGAAAGGAGCAGCAGAGATGGTACTAAAGATGTGTTCAAGATACTATGATGCTTCTGGCATTGTGAAAGATCTTGACAATGATAGCAGGCTGAAATTTGAAGGCATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGTATTGCTTTGGCACATGTAGAACTTGCAGGAGAAGAGCATGGAGATGAAGAAGACAACATAGTGGTAAAAGACAATGGTCTAACTCTGTTAGGACTTGTTGGTATTAAGGATCCATGTCGTCCAGGGGTGAAGAAAGCTGTAGAAGCTTGCCGACATGCTGGTGTGAATGTCAAAATGATAACAGGTGACAATGTTTTCACTGCAAAAGCTATAGCAACTGAATGTGGCATACTTAGGCCTAATCAGGACACAAATGGAGCAGTGGTTGAAGGAGAGGAATTTCGTAACTACACACATGAAGAGAGATTAGAGAAAGTGGACAAAATCTGTGTGATGGCTAGATCCTCTCCTTTTGATAAACTTCTAATGGTTCAATGTTTAAAACAGAAAGGCCATGTAGTTGCTGTCACTGGGGATGGCACAAATGATGCACCAGCACTCAAGGAAGCTGATATAGGACTTTCTATGGGAATCCAAGGTACTGAAGTGGCTAAAGAGAGCTCAGATATTGTTATATTGGATGACAATTTTGCATCTGTAGTCACAGTTTTGAGGTGGGGAAGGTGTGTCTATAACAACATCCAGAAGTTCATTCAATTTCAGTTGACAGTGAATGTTGCTGCACTTGCAATCAACTTTGTAGCAGCAGTGTCAGCAGGGGAAGTGCCACTTACAGCAGTGCAATTATTATGGGTGAACTTGATCATGGACACATTGGGTGCTTTAGCTCTTGCAACAGAGAAACCTACCATGGACTTGATGGACAAACCACCAGTAGGTAGAACCAAACCTCTTATCACTAACATCATGTGGAGGAATCTGTTAGCTCAAGCTTTATACCAGATAGCAGTTTTGCTGACTCTTCAATTCAAAGGTGAGTCTATCTTTGGTGTGACATCAGGGGTAAATGACACATTGATTTTCAATACATTTGTTCTCTGCCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAAGAATGTTTTCAAAGGCATTCACAGGAGCAAGTTGTTTTTGGGAATTATTGGTATGACATTAATCCTTCAGGTGGTGATGGTGGAGTTTCTCAAGAAGTTTGCTGATACAGAGAGGTTAAATTGGTGGCAATGGGCTGTTTGTATTGGCCTTGCTGCAATTTCCTGGCCAATTGGTTGGGCTGTGAAGTTGATACCTGTCCCAGATACACCATTATTCAGTTTTTTGAGTAAGATGAAGAAATGA 3048 0.417 MSMTLLTNLERIETLLNAPSTISASNKRWHSAFMTIYCSRALMSHFTLNKNNIPEKPSLPFTVIDFNSHQSFAIDQAGLTEIVKDKNVHRLQRYGGIEGVASALETNVEFGIRGDDAEGISRRQQVFGSNTYNKPPSKGFFHFVVEAFKDVTILILLVCAALSLGFGIKEHGLKEGWYDGGSIFLAVFIVISMSSISNFRQNRQFDKLSQVSSDIQIDVVRSGRRQQISIFEIVVGDVVCLKIGDQVPADGLFIDGHSLRVDESSMTGESDHVEINRNHHPFLFSGTKVADGYAKMLVTSVGMNTTWGEMMSSISRDIDEETPLQSRLNKLTSSIGKVGLIVAFLVLVVLLVRYFTGNTKDENGVKEFNGSKTKFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPVAEGAYSMVAPFVLQLIQEGVALNTTGGVHKSNSGSEFEFSGSPTEKAILSWAVLELNMDMENLTKSCSIIQVETFNSKKKRSGVLLRRKADNTVNAHWKGAAEMVLKMCSRYYDASGIVKDLDNDSRLKFEGIIQGMAASSLRCIALAHVELAGEEHGDEEDNIVVKDNGLTLLGLVGIKDPCRPGVKKAVEACRHAGVNVKMITGDNVFTAKAIATECGILRPNQDTNGAVVEGEEFRNYTHEERLEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTMDLMDKPPVGRTKPLITNIMWRNLLAQALYQIAVLLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKKNVFKGIHRSKLFLGIIGMTLILQVVMVEFLKKFADTERLNWWQWAVCIGLAAISWPIGWAVKLIPVPDTPLFSFLSKMKK. 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02477 1015 SFLD Haloacid Dehalogenase 421 797 - -
Seca10g02477 1015 ProSitePatterns E1-E2 ATPases phosphorylation site. 441 447 IPR018303 -
Seca10g02477 1015 Gene3D - 436 789 IPR023214 -
Seca10g02477 1015 SUPERFAMILY Calcium ATPase, transmembrane domain M 94 1001 IPR023298 -
Seca10g02477 1015 SUPERFAMILY Calcium ATPase, transduction domain A 217 313 IPR008250 -
Seca10g02477 1015 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 445 650 IPR023299 GO:0000166
Seca10g02477 1015 Gene3D - 116 315 - -
Seca10g02477 1015 Pfam Cation transporting ATPase, C-terminus 829 999 IPR006068 -
Seca10g02477 1015 FunFam Calcium-transporting ATPase 639 789 - -
Seca10g02477 1015 NCBIfam calcium-translocating P-type ATPase, PMCA-type 81 1001 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca10g02477 1015 PRINTS P-type cation-transporting ATPase superfamily signature 768 780 - -
Seca10g02477 1015 PRINTS P-type cation-transporting ATPase superfamily signature 439 453 - -
Seca10g02477 1015 PRINTS P-type cation-transporting ATPase superfamily signature 638 649 - -
Seca10g02477 1015 PRINTS P-type cation-transporting ATPase superfamily signature 744 763 - -
Seca10g02477 1015 PRINTS P-type cation-transporting ATPase superfamily signature 262 276 - -
Seca10g02477 1015 PRINTS P-type cation-transporting ATPase superfamily signature 660 670 - -
Seca10g02477 1015 SMART Cation_ATPase_N_a_2 87 168 IPR004014 -
Seca10g02477 1015 PRINTS H+-transporting ATPase (proton pump) signature 776 801 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g02477 1015 PRINTS H+-transporting ATPase (proton pump) signature 593 611 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g02477 1015 PRINTS H+-transporting ATPase (proton pump) signature 744 760 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g02477 1015 PANTHER CATION TRANSPORTING ATPASE 68 1001 - -
Seca10g02477 1015 Gene3D - 146 997 - -
Seca10g02477 1015 Pfam E1-E2 ATPase 216 417 - -
Seca10g02477 1015 FunFam Calcium-transporting ATPase 761 1003 - -
Seca10g02477 1015 Pfam Cation transporter/ATPase, N-terminus 95 163 IPR004014 -
Seca10g02477 1015 NCBIfam HAD-IC family P-type ATPase 717 825 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g02477 1015 NCBIfam HAD-IC family P-type ATPase 382 460 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g02477 1015 FunFam Calcium-transporting ATPase 187 315 - -
Seca10g02477 1015 SUPERFAMILY HAD-like 437 849 IPR036412 -
Seca10g02477 1015 Gene3D - 449 645 IPR023299 GO:0000166
Seca10g02477 1015 SFLD p-type atpase 421 797 IPR044492 -
Seca10g02477 1015 CDD P-type_ATPase_Ca_PMCA-like 120 877 - -
Seca10g02477 1015 Pfam haloacid dehalogenase-like hydrolase 436 758 - -
Seca10g02477 1015 FunFam Calcium-transporting ATPase 449 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02477 Seca-Chr10 30171703 30174750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02477 12 1015 Primary Pumps ATPases AT3G22910 69.990 0.0 1363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02477 K01537 - gmx:100793918 1736.47