Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02475 ATGTGTGAGGAAGTTATAACAAGCAATGGCGGTGGCGGTTCCAACAACTGGTCTCGCGTATGTGACACGTGTCGATCAGCACCTTGCAGAGTTTACTGCCATGCTGACTCAGCATACCTGTGCTCAGTCTGTGACGCTAGCATCCATGCGGCTAACCGTGTGGCTTCAAGGCACGAGCGTGTGTGGGTCTGTGAGGCTTGTGAACGTGCTCCTGCAGCCTTTCTCTGTAAAGCTGATGCTGCTTCCCTCTGTTCTTCTTGTGATGCTGATATACACTCTGCTAACCCATTGGCTAGTCGCCACCACCGTGTACCTCTTCTCCCTTTCTCTTTCTCTGCACAAGATCATGAGTTGTTTATAGCTTCATGGTTGCTGCCAAATCCTTTGAAGGAGAATGAGGATTTCTTGTTTGGTGCTGATGAGTATTTGGACCTTGTGGATTGTAATTCATGTGGTGATTTCAGTAATGTTCACTATGATGATCATCATGATCAACAACAGAACCAACAGCATAATTACAATACTGTCCCTCAGAACTATGCAGTTGTTCCATTTCAGCGTGGAGGAGAAGCTTCGCGAGCTCATATGCAACAACAATTTCAACAGGGCCTGGATTTTGACTCCTCAAAAGCTGGTTTCAGTTACGACGGTTCTCTTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGCATTGTACCAGAATCAACATTAAGCGACATCTCAGTTTCACATTCAAAATCAACAATAGGGACAAGTGAACTATTTCCTCCAATTCCAATGCCTTCACATCTTGCTCCAATGGACAGAGAGGCCAAAGTCCTAAGATACAGAGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATTAGGTATGCTTCAAGGAAGGCCTATGCAGAGACAAGACCCCGAATTAAAGGTCGATTTGCAAAGAGAACAGATGTAGAAGCTGAAGTGGACCAGATGCTATCCTCAACTCTGATGACAGAAGCTGGATGTAGCATTGTTCCCTCTTTTTGA 1020 0.4441 MCEEVITSNGGGGSNNWSRVCDTCRSAPCRVYCHADSAYLCSVCDASIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPLLPFSFSAQDHELFIASWLLPNPLKENEDFLFGADEYLDLVDCNSCGDFSNVHYDDHHDQQQNQQHNYNTVPQNYAVVPFQRGGEASRAHMQQQFQQGLDFDSSKAGFSYDGSLSQSVSVSSMDVGIVPESTLSDISVSHSKSTIGTSELFPPIPMPSHLAPMDREAKVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSSTLMTEAGCSIVPSF. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02475 339 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Seca10g02475 339 CDD Bbox1_BBX-like 63 106 - -
Seca10g02475 339 Pfam B-box zinc finger 61 106 IPR000315 GO:0008270
Seca10g02475 339 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 328 IPR045281 GO:0009909
Seca10g02475 339 Pfam CCT motif 270 312 IPR010402 GO:0005515
Seca10g02475 339 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Seca10g02475 339 CDD Bbox1_BBX-like 20 63 - -
Seca10g02475 339 ProSiteProfiles CCT domain profile. 270 312 IPR010402 GO:0005515
Seca10g02475 339 SMART bboxneu5 16 63 IPR000315 GO:0008270
Seca10g02475 339 SMART bboxneu5 64 106 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02475 Seca-Chr10 30129361 30130959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02475 14 339 C2C2-CO-like Transcription Factor Family AT3G02380 54.986 4.36e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca10g02475 zf-B_box 4.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02475 - K12135 gmx:100782635 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02475 10 30129361 30130959 Seca10g02475 10 30129361 30130959 PCT