Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02472 ATGGAGATGCCAAGAGGAGAAGCTGTTCTATGTTCTGTGGCATTGTTCTGGTTTTGGAGCTCTGCAAATGCCTTGCTTTCTCCTAAGGGAATAAACTTTGAAGTGCAAGCTTTAATGGGCATAAAAGCTTCTCTAGTGGATCCTCATGGTATTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGTAGCTGGAATATGGTCACATGTTCCCCTGACAACCTTGTCATAAGCCTGGGCATTCCCAGTCAAAATTTATCTGGTACTTTATCTCCAAGTATAGGAAACCTAACAAATCTTCGAACTGTGGTGCTACAGAATAACAACATAACAGGACCAATCCCTTCAGAGCTGGGAAAACTTTCAAAACTTCAAACTCTTGATCTCTCTGATAACTTCTTCAATGGGGAAATTCCTCCCTCTCTGGGTCATCTGAGAAGCCTCCAGTACTTGAGGTTCAACAATAACAGTTTTTCTGGGGAATGTCCAGAGTCACTGGCTAACATGTCACAGCTTGCTTTTCTTGACTTGTCCTTCAACAATTTGAGTGGTGCTGTACCTAAAATTTTGGCCAAATCATTCAGGTTAATCTCTCTCTCTCTCTCTCTCTCTATGTATATAGTCTTCACTTTGATGATTATAGTCTTCAGAAAATTTGGTACTAACATCAAAATTCTTCTCATTCCCTCATGTTTCAGTATTGTTGGAAACCCTCTTGTCTGTGCTACAGGAAAAGAAACAAACTGCCGTGGGATGACACCCATCCCTATGTCCATGAACTTAAACAGTTCTGAGGGCAGACCAAAAGCTCACAAATTGGCCATTGCCTTTGGTTTGAGCCTAGGATGCCTCTGCTTATTAGTTCTTGGTTTTGGATTTTTTCTATGGAGGAGGCACAAGCATAATCAACAAACATTCTTTGATGTTAAAGACCGGCATCATGAAGAAGTCTATCTTGGAAACTTGAAGAGATTCCAATTAAGAGAACTCCAGATTGCTACTAACAACTTCAGCAACAAAAACATACTGGGAAAGGGTGGTTTTGGAAAAGTCTACAAAGGAGTTCTTTCAGATGGCACTCTTGTGGCTGTAAAAAGGCTTATAGATGGCAATGCCATTACAGGAGAGATACAATTTCAGACTGAAGTTGAAATGATCAGCTTAGCAGTGCACCGAAACCTCCTCAAACTGTATGGATTTTGTATGACACCAACCGAAAGGCTTTTAGTTTACCCTTACATGTCCAATGGCAGTGTTGCTTCTCGTCTCAAGGGTAAACCAGTCTTGGACTGGGGCACAAGAAAACAAATTGCCTTAGGAGCAGCAAGGGGACTATTATACCTCCATGAGCAGTGTGATCCAAAGATAATCCATAGAGATGTGAAAGCTGCTAATATATTGCTTGATGACTATTGTGAGGCAGTAGTTGGAGATTTTGGGTTGGCAAAGCTTTTAGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACAGTAGGGCATATTGCACCAGAGTATCTTTCCACAGGACAATCATCTGAAAAGACTGATGTCTTTGGATTTGGCATTCTGCTTCTTGAATTGATCACAGGCCAGAGGGCTCTAGAATTTGGAAAGGCAGCCAACCAAAAAGGAGCAATGCTTGATTGGGTAAGGAAAATCCATCAGGAGAAGAAGCTTGAGTTGCTTGTTGACAAGGATCTCAAGAGCAACTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTGGCACTCTTGTGTACACAATATCTTCCAGGCCATAGACCAAAAATGTCTGAAGTTGTACGTATGCTTGAAGGTGATGGATTAGCAGAGAAATGGGAAGCTTCTCAAAGTGCTGACACTAACAAGTGCAAACCACATGAGTTTTCTTCATCAGATCGATATTCTGATCTTACTGATGACTCTTCATTGTTAGTCCAGGCCATGGAGCTTTCAGGTCCTAGGTGA 1974 0.4179 MEMPRGEAVLCSVALFWFWSSANALLSPKGINFEVQALMGIKASLVDPHGILDNWDGDAVDPCSWNMVTCSPDNLVISLGIPSQNLSGTLSPSIGNLTNLRTVVLQNNNITGPIPSELGKLSKLQTLDLSDNFFNGEIPPSLGHLRSLQYLRFNNNSFSGECPESLANMSQLAFLDLSFNNLSGAVPKILAKSFRLISLSLSLSMYIVFTLMIIVFRKFGTNIKILLIPSCFSIVGNPLVCATGKETNCRGMTPIPMSMNLNSSEGRPKAHKLAIAFGLSLGCLCLLVLGFGFFLWRRHKHNQQTFFDVKDRHHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGKVYKGVLSDGTLVAVKRLIDGNAITGEIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKIHQEKKLELLVDKDLKSNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQSADTNKCKPHEFSSSDRYSDLTDDSSLLVQAMELSGPR. 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02472 657 SUPERFAMILY L domain-like 34 231 - -
Seca10g02472 657 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Seca10g02472 657 Pfam Leucine Rich repeats (2 copies) 98 139 IPR025875 -
Seca10g02472 657 Gene3D Phosphorylase Kinase; domain 1 306 413 - -
Seca10g02472 657 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 206 - -
Seca10g02472 657 FunFam Somatic embryogenesis receptor kinase 1 306 413 - -
Seca10g02472 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Seca10g02472 657 FunFam Somatic embryogenesis receptor-like kinase 1 414 626 - -
Seca10g02472 657 Gene3D Ribonuclease Inhibitor 31 250 IPR032675 -
Seca10g02472 657 SUPERFAMILY Protein kinase-like (PK-like) 321 612 IPR011009 -
Seca10g02472 657 MobiDBLite consensus disorder prediction 617 639 - -
Seca10g02472 657 ProSiteProfiles Protein kinase domain profile. 337 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02472 657 SMART serkin_6 337 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02472 657 Pfam Protein kinase domain 338 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02472 657 Gene3D Transferase(Phosphotransferase) domain 1 414 626 - -
Seca10g02472 657 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 19 617 - -
Seca10g02472 657 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02472 Seca-Chr10 30057467 30062309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02472 20 657 Receptor kinase-like Gene Family AT5G16000 73.692 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca10g02472 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02472 - - gmx:100806650 1078.93