Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02453 ATGGAAGCTAATGAACCCCTCCGACTTCGTCATCAATCTCACGTTCAAGGTATGGAACGGGTTGTGGCAACGGTGAGTGGTTACCATGGCTCGGAGCGGTTCAACCTGATCAAGCTGATTTCACATTCTGGAGCCAACTACGTTGGTGCCATGTCAAAATCAATAACACACCTGGTGTGTTGGAAGTTTGAAGGAAAGAAATATGATATTGCTCGAAAGTTTAGAATACTTGTAGTTAACCACCGATGGATTGAAGATTGCATAAAGGAAGGAAGGCGTGTCCCGGAAGATTCTTATATCTTGCAAAGTGGATTTGAAGTAGGGCCGTTGATACTGGAAGTTGCGGCCACTGTTCAAACAGGTAGCATAACGAAGAATAAAGTTGTTATCGATCTCAGTTCTGAAGTTTGTGGAAATTCTGTTCTGGAAGATTCTTGCTTATTGAAAAAGCATGAGGAGTCAAGTTCGTATTCATCTAGACTGTCAAGGAAAGGAAAAAGAAATGTTTGCAGCGGTAGTGGAACTAGTACTGCGGCTGGACATTCTCGTAAAGGAAGAAGGTTGATGAAAAATGTTGTTGATGAAGTGGGATTGGATCCCTTAATTTTGGATTTAAGCTCAGATGACCACCTTTGCAGAATGGATAGACTACACACTGAAGCTGCAGCTACCTCTAGCCTTTCTGGTGGTGCCAATACTAACAATATTCAAGAAAATAATGAAGGAACCGATGTTGGATTAAGTAATCAAAGCACAACTATCAATGGAGGTTCAGATGGCATTGAGCAGAACAAAGATTCAAATCATATATCTACTCTTAGTAATTCAACTTTGTTTATAGAAGATCCCTCACCTGTGGCACAAACACCAACAGATTTATGTTCCAATGCTGAAAAGTTCACAGATGATGATCAAGTTGATAGCATTCCTGGCTTACCTACTTCAAATGAGCTGTCATGTGTTATATGTTTCACAGATTTCAGTTCAACAAGGGGGATTTTGCCGTGTGGACATCGGTTTTGTTTCCCATGCATCCAGAGTTGGGTTGATCATAGGGTATTCCTTTTAATGATTAGTATAATATTCCTTTTTGCTTGCCATTTTCTTTTGAATAGATTTCAAAGTTGTGCTCTATTTTTTTAA 1143 0.3981 MEANEPLRLRHQSHVQGMERVVATVSGYHGSERFNLIKLISHSGANYVGAMSKSITHLVCWKFEGKKYDIARKFRILVVNHRWIEDCIKEGRRVPEDSYILQSGFEVGPLILEVAATVQTGSITKNKVVIDLSSEVCGNSVLEDSCLLKKHEESSSYSSRLSRKGKRNVCSGSGTSTAAGHSRKGRRLMKNVVDEVGLDPLILDLSSDDHLCRMDRLHTEAAATSSLSGGANTNNIQENNEGTDVGLSNQSTTINGGSDGIEQNKDSNHISTLSNSTLFIEDPSPVAQTPTDLCSNAEKFTDDDQVDSIPGLPTSNELSCVICFTDFSSTRGILPCGHRFCFPCIQSWVDHRVFLLMISIIFLFACHFLLNRFQSCALFF. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02453 380 ProSiteProfiles BRCT domain profile. 10 101 IPR001357 -
Seca10g02453 380 ProSitePatterns Zinc finger RING-type signature. 336 345 IPR017907 -
Seca10g02453 380 Gene3D BRCT domain 12 100 IPR036420 -
Seca10g02453 380 Pfam twin BRCT domain 21 83 IPR001357 -
Seca10g02453 380 MobiDBLite consensus disorder prediction 158 185 - -
Seca10g02453 380 MobiDBLite consensus disorder prediction 161 180 - -
Seca10g02453 380 MobiDBLite consensus disorder prediction 223 248 - -
Seca10g02453 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 375 IPR013083 -
Seca10g02453 380 PANTHER F5A8.9 PROTEIN 9 120 - -
Seca10g02453 380 Pfam Zinc finger, C3HC4 type (RING finger) 320 350 IPR018957 GO:0046872
Seca10g02453 380 SMART BRCT_7 15 91 IPR001357 -
Seca10g02453 380 SUPERFAMILY BRCT domain 16 102 IPR036420 -
Seca10g02453 380 ProSiteProfiles Zinc finger RING-type profile. 320 348 IPR001841 -
Seca10g02453 380 SUPERFAMILY RING/U-box 311 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02453 Seca-Chr10 29756092 29758490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02453 55 116 Core DNA Replication Machinery Family AT4G02110 49.206 9.22e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02453 - - gmx:100815034 469.929