Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02391 ATGCGGATGAGCTGCAATGGATGCCGTGTCTTACGAAAAGGCTGTAGCGAAGATTGTAGCATCAGACCTTGTTTGCAATGGATCAAGAGTCCTGAATCACAAGCCAATGCAACTGTCTTTCTTGCTAAGTTCTATGGCCGTGCTGGCCTCATGAACCTCATCAACGCTGGCCCTGAACACCTTCGTCCAGCAATTTTTCGTTCGTTGCTGTATGAGGCATGCGGGAGGATCGTGAACCCGATTTATGGTTCCGTTGGTTTGTTATGGTCAGGGAGCTGGCAGTTATGCCAATCCGCCGTGGAAGCCGTTTTAAAGGGCGCGCCGATCACGCCGATAGCTTCGGAGGTTGCGGCCAGCGGGCGGGGCCCACCACTTAAGGCCTATGACATACGCCACGTGTCCAAGGATGAGAACTCCGCCGCGTCCAAAGAGGCTCAGCGAGTCAAGACTCGCTCCCGGTTCAAGCGGACCGGCGGGTCGGTCTTAAAGCCTAAGGCCACCAAGGGAACCGGTTACGTTTCGGTTGAAGAGGACCGGTCTGCGAGTCACGAATCGTCGCTGAGCCATCCGCCTGAGGCGGCTGCTGCGGCGGTGGATGGAGAGAGCAATAAAGAGAGTGAGAGTGTGGTCTCCGTAGAGACTACGATTCTCTTTCATGATGAACCGGAGTCGAACCCGAAGGTGAGTGACCGAGCCGAGGAGAGTGGTGATGATGAGGTTGGTTTGGAGCTGACGCTCGGGTTCGAACCGGCTTCACGTGCGTATCACGTGGTTCCGGTGAAGAAGAGAAGGATTGAGTTGAAGGATTGTAGTGTCTCGGCTGAGATTGAGAATGGCTCGTGCAAGATGGAGCTTGGGCTTGAGCTTGCGGCTTGA 876 0.5514 MRMSCNGCRVLRKGCSEDCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQSAVEAVLKGAPITPIASEVAASGRGPPLKAYDIRHVSKDENSAASKEAQRVKTRSRFKRTGGSVLKPKATKGTGYVSVEEDRSASHESSLSHPPEAAAAAVDGESNKESESVVSVETTILFHDEPESNPKVSDRAEESGDDEVGLELTLGFEPASRAYHVVPVKKRRIELKDCSVSAEIENGSCKMELGLELAA. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02391 291 MobiDBLite consensus disorder prediction 136 206 - -
Seca10g02391 291 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Seca10g02391 291 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Seca10g02391 291 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 246 - -
Seca10g02391 291 PIRSF AS2 1 288 IPR017414 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02391 Seca-Chr10 28762689 28764298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02391 1 287 AS2 family AT3G02550 61.986 2.44e-111 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca10g02391 LOB 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02391 - - gmx:100814175 419.083