Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02343 ATGGAGGATATTGAACCTGATATAATTAAAAGGCACCCCCAGGCAGAAAGTGAATGTCCAATATCACTTCAGGAGAGTCAGAACCCCAAGGATTCTGCTGTTGCAGACAGTAACAAGGTCATTGACAAAGAGAATCAGTGTACAAGCCCAAATGTTGGCATCGATGAATGTCAGACCTCAAATATTTCCCATGATGACAAATTACATATTGATGTCTGTGATGAACAGCTGTGTCAGAACCCCAATGCTACATTTATATCTATGACCGATACTGATGTAGAAAATGAGGAATTATATGTGGCTCCAGAGATTGGAATGGAGTTTGAATCAGAAGATCATGCTTACAAGTGTTATAGCAAGTATGCTGTTCTCAATGGTTTCAGCATAAGAAAGGATTTTGTCAACAAAAGTAAGATAGATGGTGCAGTGGTGTCCAGAAGATACACCTGCCACAGACAGGGTTATCGTCCTAACAGAAATGGTACATACATAAGGAAATTCCAGCATGAAACAAGGACTGGTTGCTTAGCACATATGACTATCGGTCGTCAGCCAAAGGGCAAGTTTCGTGTCACTAGTTTTGAAAGAGAGCACAATCATGAGTTTGTAACACCCTGTACTGCTCATATGTTACCATCACAGAAAAGATTGAGTTTTGCTCAAGCTGTTGAAGCGAACATAACTGAGTCCAGGTTGGATGGGGTACCAAAACTGGGAATGGGATTTGACTCAGAGGAGCATGCATATGAATTTTATAATACATATGCTGGACGTGTAGGTTTCAGTGTAAGAAAAGATTATGTAAATAGGAGTAAAGTTGATGGTGCTGTAGCATCTAGAAGGTTTACTTGCTTCAGAGAAGGTTTTCGGCAGAAAGACAAGCGGGATATGAATGTAAAGAGACCTCGGAAGGAAACACGGATTGGGTGTTTGGCACAATTGGTTATTTCTCGACAACCTGACGGTAGGTATCATGTAACTCACTTTGAAGAAAAGCATAATCATGAGCTTGTTGCTGCATGTAGAGCTCATATGTTGAGGTCACAGAAGAGGTTAGCTGCAACCGAAGTTGAAAACAACCTTGAAGATGGACCCAATATGCTGCCTAAGTCAGTCTCTGAATCCAATTGCAGGACTGTTGAAGGTTTTCATGATCTGGATTATGATCCTGTAGATTATGAAAATAAACTACCTTTCAAATCCACAAGAGAAATAAAAGCAGGAGAAATTGAAAAGATTAGGCACCTCTTTCAAAGCAAGCAATCAAAGAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATGCTGATGATCAAGTAACTAATATATTTTGGGCTGATGCAAAGATGATAGTAGACTACAGTGATTTTGGTGATGTTGTTTGTTTTGATAGTAGTTATAAATTTTACAAGGACTCCCGCCCATTTTCTCCATTCCTTGGTATAAATAATCACAAACAAATGATTATCTTTGGGGCTGCACTTCTATATAATGAATCTCTGGAATCTTTAAAGTGGTTGTTTCGAGTTTTCATTGAGGCAATGTCTGGAAGCAAGCCAAAGACAATCCTAACAGATCAAGATGCAATGATAGCTGAAGCAATTAATTCCACATTACCTCAAACGAATCACCGAGTTTGTGCCTGGCATGTCTACCAAGATGCCCTCAAGCAACTGAGCCATATGTCTGTTGAATCTGGTTCTTTTGTAAATGATTTGAGCAGCTGCTTTTTTGATCATGAAGAGGAGGAGGATTTTGTTAATGTGTGGAATACTCTCCTGGACACTTATAATCTGTGGGAAAATGAATGTTTGCGTCAAATATATGAAAGCAGAGACCAATGGGCCATAGCATATGGAAGACATATTTTTTGTGCTGACATAGCTAACATACTACTGAGAGAAAACCTTACTGGAAACCTGAAAAAGCACCTAAAGGATGACTCAGATGTTCTTCCATTTCTCAAGCATCTTGCAAAGGTGGTGACTGATTGGCACTACAAAGAATTACAAGCCAATTATGACATGAGCCAGCGTATGCCAGCCCTGATGGGCGATGTCATTACGTTAAAGCATGCAAGAGATACATACACACCAAAGATGTTTGAGTTATTCCAGAAAGAATATGAAGCATCTTTAAATCTAGTCATAAATCATTGCACTGAGAATGGGTCATTGTTTAATTATAAAGTAAGCATATATGAACAGGTACGGGAGTATTCAGTTTCTTTTGATTCATCTAATGAGACAATCAGTTGCAGCTGTATGAAATTCGAGTATGTGGGAGTCTTATGCAGCCATGCATTAAAAGTTCTTGATTATAGGAACATAAGGATAGTTCCATCCCAGTACATCTTAAAGAGATGGACTAAAGATGCTAGAGTTTGA 2385 0.3895 MEDIEPDIIKRHPQAESECPISLQESQNPKDSAVADSNKVIDKENQCTSPNVGIDECQTSNISHDDKLHIDVCDEQLCQNPNATFISMTDTDVENEELYVAPEIGMEFESEDHAYKCYSKYAVLNGFSIRKDFVNKSKIDGAVVSRRYTCHRQGYRPNRNGTYIRKFQHETRTGCLAHMTIGRQPKGKFRVTSFEREHNHEFVTPCTAHMLPSQKRLSFAQAVEANITESRLDGVPKLGMGFDSEEHAYEFYNTYAGRVGFSVRKDYVNRSKVDGAVASRRFTCFREGFRQKDKRDMNVKRPRKETRIGCLAQLVISRQPDGRYHVTHFEEKHNHELVAACRAHMLRSQKRLAATEVENNLEDGPNMLPKSVSESNCRTVEGFHDLDYDPVDYENKLPFKSTREIKAGEIEKIRHLFQSKQSKNPSFFYAFQLDADDQVTNIFWADAKMIVDYSDFGDVVCFDSSYKFYKDSRPFSPFLGINNHKQMIIFGAALLYNESLESLKWLFRVFIEAMSGSKPKTILTDQDAMIAEAINSTLPQTNHRVCAWHVYQDALKQLSHMSVESGSFVNDLSSCFFDHEEEEDFVNVWNTLLDTYNLWENECLRQIYESRDQWAIAYGRHIFCADIANILLRENLTGNLKKHLKDDSDVLPFLKHLAKVVTDWHYKELQANYDMSQRMPALMGDVITLKHARDTYTPKMFELFQKEYEASLNLVINHCTENGSLFNYKVSIYEQVREYSVSFDSSNETISCSCMKFEYVGVLCSHALKVLDYRNIRIVPSQYILKRWTKDARV. 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02343 794 Pfam FAR1 DNA-binding domain 250 338 IPR004330 -
Seca10g02343 794 Pfam FAR1 DNA-binding domain 118 203 IPR004330 -
Seca10g02343 794 ProSiteProfiles Zinc finger SWIM-type profile. 739 775 IPR007527 GO:0008270
Seca10g02343 794 SMART 26again6 750 777 IPR006564 GO:0008270
Seca10g02343 794 Pfam MULE transposase domain 459 552 IPR018289 -
Seca10g02343 794 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 92 220 IPR031052 GO:0006355
Seca10g02343 794 MobiDBLite consensus disorder prediction 19 34 - -
Seca10g02343 794 MobiDBLite consensus disorder prediction 1 34 - -
Seca10g02343 794 Pfam SWIM zinc finger 728 774 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02343 Seca-Chr10 28019963 28023642 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g02343 MULE 5.2e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02343 K17604 - gmx:102659753 1299.26