Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02337 ATGGGAAGACAGCCATGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACAATTGAGGAAGATCATAAGCTCATGAATTTCATCCTCAACAATGGCATCCACTGCTGGCGAACAGTTCCTAAGCTTGCAGGACTGCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGCTTTACAGAAATGGAAGAGGATCAAATTATACAACTACATTCTTGTCTTGGTAACAGGTGGTCTAAGATTGCTGCACATTTTCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAGAAGAGGTTGAAGCTCCTTGGTCTGGATCCTGTGACTCTGAAGCCAATTGATCAGCAAAAGGAACAGTCTGATGATGACAAAAATAAGAGAGAAATATGGCCAAATACTTCAAAAAGGCCTGAAGGTGTGGAGAATAATTCCTTGGACATTCATGGCAGAGAAGAAATGCCAAAAACAGAAGGGAGGAGAGAGGAAGATAAGGTGACTTGGGATGATACCTCCTCAGGATTTTTAAACAATTATGAAATGCTATGCTCACAGTTGGACTTGGGATCATGGATGAGTCAAGAAACCAAAACCAGTACTAGTTCTTACTGTAGTTCTTCTTTCTCTCTGGATGATTCTACCAACCTTTCTGTGGGTGAATCCCCTTGCCTTAAGGATAATGCCTTACAACAATGGGTTGATGGTTTGGATTCCATTCTCTCATGGGATAGCTTCAATCCTCTTGAAAAAGATTTTTATCTTCTTGGAAAATAA 819 0.4103 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRWSKIAAHFPGRTDNEIKNHWNTKIKKRLKLLGLDPVTLKPIDQQKEQSDDDKNKREIWPNTSKRPEGVENNSLDIHGREEMPKTEGRREEDKVTWDDTSSGFLNNYEMLCSQLDLGSWMSQETKTSTSSYCSSSFSLDDSTNLSVGESPCLKDNALQQWVDGLDSILSWDSFNPLEKDFYLLGK. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02337 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca10g02337 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca10g02337 272 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 217 - -
Seca10g02337 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca10g02337 272 CDD SANT 16 61 IPR001005 -
Seca10g02337 272 FunFam MYB transcription factor 11 67 - -
Seca10g02337 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca10g02337 272 FunFam MYB transcription factor 68 129 - -
Seca10g02337 272 SMART sant 66 114 IPR001005 -
Seca10g02337 272 SMART sant 13 63 IPR001005 -
Seca10g02337 272 CDD SANT 70 110 IPR001005 -
Seca10g02337 272 MobiDBLite consensus disorder prediction 127 182 - -
Seca10g02337 272 Gene3D - 11 67 - -
Seca10g02337 272 MobiDBLite consensus disorder prediction 131 150 - -
Seca10g02337 272 Gene3D - 69 146 - -
Seca10g02337 272 MobiDBLite consensus disorder prediction 157 182 - -
Seca10g02337 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca10g02337 272 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Seca10g02337 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02337 Seca-Chr10 27978735 27980840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02337 1 154 MYB Transcription Factor Family AT5G16600 67.532 9.77e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g02337 Myb_DNA-binding 8.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02337 K09422 - gmx:100819471 467.618