Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02328 ATGAATGAAAGATTTGGACGAGAGATTCGTGTTTTTGAAACATCTTCACTTTCTCCGTCACCAAATGCTGCAGCAAACAATGAAGAGGAGACTGATGACTTCTATGAGTTTACTGCTGAAGACTATCACAGACTTTTGGCTACTAAAAAAGAAGATAAATTCTTGAAGACTAGAAAAATCCGAGAAGCAGAAGAAGCAGCTCGTAGGTCAAGAATAACCAAAGCTGTAATTAGAGTTCGCTTCCCTGATAATCACACATTGGAGGCTACCTTTCACCCATCAGAAACAATCGCGAGTTTAATTTATCTCCTCACTAAAGTGATTGCACAACCAGATCAGCCATTTTATATATATACTACTCCACCTAAGAAGCTGATCAAAGACATGTCTCAAGATTTCTATACTGCTGGATTTTGTCCTGGTGCCATTGTGTACTTCTCATACAATGTTCCAAAAGGTGAGTTCCTGCTGTCAGGAGAATAA 483 0.3892 MNERFGREIRVFETSSLSPSPNAAANNEEETDDFYEFTAEDYHRLLATKKEDKFLKTRKIREAEEAARRSRITKAVIRVRFPDNHTLEATFHPSETIASLIYLLTKVIAQPDQPFYIYTTPPKKLIKDMSQDFYTAGFCPGAIVYFSYNVPKGEFLLSGE. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02328 160 Pfam UBX domain 73 141 IPR001012 GO:0005515
Seca10g02328 160 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 2 154 IPR044232 GO:0032984|GO:0051117
Seca10g02328 160 ProSiteProfiles UBX domain profile. 70 146 IPR001012 GO:0005515
Seca10g02328 160 Gene3D - 6 145 - -
Seca10g02328 160 SUPERFAMILY Ubiquitin-like 49 146 IPR029071 -
Seca10g02328 160 CDD UBX2_UBXN9 75 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02328 Seca-Chr10 27917738 27920455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02328 3 100 C2H2 Transcription Factor Family AT2G01650 36.275 1.48e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02328 K15627 - gmx:100818386 253.832