Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02326 ATGGATTTTAATAGTGATGATTCAACTGTTAATTTTGAGGATGATAGAGACATTAGTTATAGTGAGTCTTCTAGCAGTGATGAAATGAGTAGTGAAAATGATATACATAGTGATGAGGAAAATGTGTCTAACCTTCAAGCAGAGGCTGATATGGATGATGGGAATGATGTTATGGATACAGATGTTAAAGAGGATGTGTCAATGAGGATAATATACTTGACAAGAGCTGCTATATTGGCTCTGGAGTTCTCTACTGAAAACGATGCGTTCAATTTTTACTTTTCTTATGCGAGATGTCATGGATTTTCTATAAGGAAGGATGATAGAATTCGAGACAGTAAAGGAATGGTCATAATGCGGCAGTATTTATGTAGTAGGGCTGGTTTGAGGGACAAAAAGCATTTGATTAGGTTAGATCGAAAAAAGGAACACAAACCTCTTACCCGTACCAACTGTCTAGCTAAGTTGAGAGTTAGGTTTGATTATAAGTCTGCCAAATTCAAGGTTGTTTCATTTGAAGACTCTCACAATCATGATTTAACCCCTGCTAAGTTTGTACCTCTAATTCCTGCATATCGGGGATTGACTGATGGGGACAAAGCCCAAGTTGATGCATTGCATTCTCATGGTGTTAGACCTTGCCAGATAATGGGTTTTCTTGTTGATCAGAAAGGAGGCTATAGAAATGTTGGATTTTCAAAGAAAGATTTGTATAACTACATTGATGAGGTTAAGCATGGTAAGATCAAGGATGGGGATGCAGTTGCTGGCTTAAGTTATTTGCAAGGAAAGGCAGATAATAATCCAATGTTTTTTTCAAGATTCTTATGTTCTGAGGATGGTAAACTTACTCATCTATTTTGGTGTGATGCAAATAGTCGTGCAGATTTTCAATTTTTTGGGGATGTGCTTGCATTTGATGCAACATACAAGAAGAACAGATATAAATATCCATTGGTCATATTTTCTGGGAAAAATCACCACTCTCAAACAGTAATATTTGGGTGTGCACTCATTGCTGATGAAACAAGTGATACTTATAAGTGGGTGCTAAGGATGTTTTTGGAAGCAATGTTCAACAAGCATCCAGCTGCAGTGGTTACTGATGGAGATGGTGCTATGAGGGATGCTATTAAGGTAGTATTTCCAAATGCGTGTCACAGGTTATGTGGGTGGCATTTGAATAAGAATGCATGTGAAAATGTTAAGAATCCAAAATTTTTGGATGATTTCAAGAAAGCAATGTATAGTAATTTCACACCAAATCAATTTGAAGAGTTTTGGGAGGAAATGGTAAGTGAACATGGTCTACAAGGAAATAGGTGGGTTATGAAAACCTACGATATGAAGGAAATGTGGGCGACTGCATATTTACGTGATAAATTCTTTGCTCGCATTAGAACTACATCTCAATGTGAAGGCATTAATTCACTAATAAAGGCTTATGTTAGGAGTAAGAATACGATTATTGAATTTATTCATAATTTTGAGAATTCTCTTAGGGAATACAAGTACAAAGAATTGTCTTCTAACTTTAATTCTCTTTATTTTGAACCTGTTCTTACTACCTCACTTCAGAAGATAGAGCGTCAAGCTTCTAAGGTGTTCACTTTGGATATTTTTAAAGATGTCAAGTATGAGATTGAAAGGGCAGGTGCTTTAAATGTAATTGAGCGTTCACTTGAAGGGGATAATGTTGTTTTCAAATTAAATGAATATTGTAAGCCTCGTAGTGAACGCTTGGTTGTTTATGATAAAGAGAATTCTAGATTTGTTTGTGACTGTCGATTGTTTGAATCTTGTGGCATTCCATGTCGACATATTCTCTGTGCCATGAGACTGGAGGACATAGATACTATACCCTCTTCTATGATTTGCAAACGATGGAGGAAGGATATTAAGAGTGACTTGATGTTATCAGAAGGTTTGGATGAGGTAGAACCTGACATGATGAGGGTTTGCCGATTTGTGGTTGCTAGCTCTCATTGTAACAGCCTTTGTGATATGGTTTCCCAAAAGCGTGAGCATTGTAAGCAGTTTATAAATGACATTATGAAGCTGAAACAAAAGTATGAGAAATTGTGTTCCAGTAGTACCGCAACTATTGTTGAGGAAAATGTTGTACAAGATCCCACTGTTGTGAAGACAAAAGGGGCCCCTATGAAGACAAGGAAGAGGCGTAAGAGTAAGAGGTGTTCAAACTGTAAGATATCTGGACATGTTATCACTACCTGTCCTAGTTTGGTTCCACCAGAAGATGATGAAGTCAACATTAATGATGAAGACTATGGTCCTGAATCACAGAGTCTTAGGAGGGATGCAGCCCAAGTAATTTCATATTTCATTTTATCATTCTTAAAAAAATGTTTGTAA 2373 0.3675 MDFNSDDSTVNFEDDRDISYSESSSSDEMSSENDIHSDEENVSNLQAEADMDDGNDVMDTDVKEDVSMRIIYLTRAAILALEFSTENDAFNFYFSYARCHGFSIRKDDRIRDSKGMVIMRQYLCSRAGLRDKKHLIRLDRKKEHKPLTRTNCLAKLRVRFDYKSAKFKVVSFEDSHNHDLTPAKFVPLIPAYRGLTDGDKAQVDALHSHGVRPCQIMGFLVDQKGGYRNVGFSKKDLYNYIDEVKHGKIKDGDAVAGLSYLQGKADNNPMFFSRFLCSEDGKLTHLFWCDANSRADFQFFGDVLAFDATYKKNRYKYPLVIFSGKNHHSQTVIFGCALIADETSDTYKWVLRMFLEAMFNKHPAAVVTDGDGAMRDAIKVVFPNACHRLCGWHLNKNACENVKNPKFLDDFKKAMYSNFTPNQFEEFWEEMVSEHGLQGNRWVMKTYDMKEMWATAYLRDKFFARIRTTSQCEGINSLIKAYVRSKNTIIEFIHNFENSLREYKYKELSSNFNSLYFEPVLTTSLQKIERQASKVFTLDIFKDVKYEIERAGALNVIERSLEGDNVVFKLNEYCKPRSERLVVYDKENSRFVCDCRLFESCGIPCRHILCAMRLEDIDTIPSSMICKRWRKDIKSDLMLSEGLDEVEPDMMRVCRFVVASSHCNSLCDMVSQKREHCKQFINDIMKLKQKYEKLCSSSTATIVEENVVQDPTVVKTKGAPMKTRKRRKSKRCSNCKISGHVITTCPSLVPPEDDEVNINDEDYGPESQSLRRDAAQVISYFILSFLKKCL. 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02326 790 ProSiteProfiles Zinc finger SWIM-type profile. 580 616 IPR007527 GO:0008270
Seca10g02326 790 Pfam MULE transposase domain 303 397 IPR018289 -
Seca10g02326 790 MobiDBLite consensus disorder prediction 1 39 - -
Seca10g02326 790 PANTHER OS01G0519700 PROTEIN 78 729 - -
Seca10g02326 790 SMART 26again6 591 618 IPR006564 GO:0008270
Seca10g02326 790 Pfam FAR1 DNA-binding domain 91 181 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02326 Seca-Chr10 27879622 27881994 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g02326 MULE 1.4e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02326 - - ccaj:109811679 830.861