Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02313 ATGGAAGTTTCACGTCTCTCAGTCTCAGACAAGTACTTCTTCTTCTCCCATCCAATTCCCCATTCCTCTTGGGCTCACCCTCTCCCAGCCCTGCCCACATTCTTCGCCCTCTCGCTCTGCAAGAACCATCGCCTCCGCCGGCGCCGGTGGAGTTACCGTTGCGCCTCCAATCCCGACACCTTGCTCGCCGGCGCCGTCGTCTCTGCCGCCGGAAAAAAGCACGAGGAAGCTTACGGCGACTTGAAATCTTGGATGCACAAGCATGGCCTGCCTCCGTGCAAGGTTGTTCTGAAGGAAAGACCTTCCCACGATGATAGCCATAAGCCTATACATTATGTTGCTGCCAGTGAAGATCTTCAGGCGGGCGATGTTGCATTCTCCGTTCCAAATTCATTGGTCGTCACTCTAGAGCGTGTCTTGGGAAACGAGACTGTTGCTGAGCTATTGACCACAAACAAATTTTCCGAATTGGCATGCTTGGCATTGTATCTAATGTATGAGAAGAAACAGGGGAAGAAGTCTTTCTGGTATCCATACATCAGGGAGCTTGATCGTCAACGAGGTAGGGGTCAGTTGGCAGTGGAATCACCTCTTCTATGGTCAGAATCAGAGCTGGCTTACCTTGCAGGCAGTCCATTAAAGGCTGAAATAATTCAAAGGATTGAAGGAATAAGAAAAGAGTATAATGAACTTGACACAGTCTGGTTTATGTCTGGTTCTCTCTTTCAGCAATACCCATATGACATTCCCACTGAGGCTTTTCCATTTGAGATTTTCAAGCAAGCCTTTGCTGCTGTTCAGTCATGTGTGGTGCATTTACAGAAAGTTAGTTTAGCTCGGAGATTTGCTTTGGTACCCCTGGGACCTCCTTTGCTGGCCTACCGAAGCAAGTGCAAGGCAATGTTAAGTGCTGTTGACGATGCTGTTGAGCTTGTGGTTGATCGCCCATATAAAGCTGGGGACCCAATAGTTGTCTGGTGTGGCCCACAGCCTAACACAAAGTTACTTACAAACTATGGTTTTGTTGATGAAGATAATCCTTATGATCGTCTAGTAGTTGAGGCAGCCTTGAATACTGAAGATCCACAATATCAAGATAAAAGGATGGTTGCTCAAAGAAATGGAAAGTTATCAATTCAAGTATATGCTGGGAAGGAAAGGGAAGCTGTCTTAGATATGCTTCCTTATCTGCGTTTAGGCTATGTTTCAGATCCTTCTGAGATGCAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCTGTGAGCCCTTGTATGGAGCAGGCCGTGTTGGACCAGCTGGCTGATTATTTCAAGACTCGGCTCGCCGGCTACCCTACTACATTGGCTGAAGATGAATCTATGCTGACAGATGGTAGTTTGAATCCAAAGAAGCGAGTTGCTACTCAACTTGTTAGGCTGGAAAAGAAAATGCTTCATGCATGTTTGCAGGCAACCATTGATTTCATAAACCAGCTACCAGACCACAGTCAGAGTTATTCTATGTCATCCATTGTCACAAAGAAAGACGGTGCTGGCTCTACTGGCAGCAGCTCCTTAAGATCCCTTGCGCTAATTGGAGCTGGTGTCTCTGGTTTATTGGGTTTTGCGACAACAGCATCAGCTGATGAAGCTGAGCATGGCCTGGCATGCCCAAGCTATCCATGGCCTCACAAGGGCATCCTCAGTTCATATGATCATGCTTCGATTCGCCGTGGTCATCAAGTTTATCAACAAGTCTGTGCTTCCTGTCATTCTATGTCTTTGATATCATACCGTGACTTGGTTGGTGTTGCTTATACGGAAGAAGAGGTAAAAGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTTACACGCCCTGGAAAACTCAGTGATCGCTTTCCTGAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCAGATCTAAGTCTTATTACCAAAGCTCGTCACAATGGTCAAAACTATGTGTTTGCCCTTCTAACTGGTTATCGTGACCCCCCTGCTGGTGTTTCGATTAGAGAAGGACTGCACTACAATCCTTACTTTCCTGGTGGTGCCATCGCCATGCCTAAAATGCTTAATGATGGCGCTGTTGAGTATGAAGATGGTACCCCTGCTACAGAATCCCAGATGGGGAAAGATATTGTGTCATTCTTGTCTTGGGCTGCCGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTACTATCACTGGCATTACTTCAAGCTGCCTATTATCGTCGCCTTCGGTGGTCTGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG 2355 0.4667 MEVSRLSVSDKYFFFSHPIPHSSWAHPLPALPTFFALSLCKNHRLRRRRWSYRCASNPDTLLAGAVVSAAGKKHEEAYGDLKSWMHKHGLPPCKVVLKERPSHDDSHKPIHYVAASEDLQAGDVAFSVPNSLVVTLERVLGNETVAELLTTNKFSELACLALYLMYEKKQGKKSFWYPYIRELDRQRGRGQLAVESPLLWSESELAYLAGSPLKAEIIQRIEGIRKEYNELDTVWFMSGSLFQQYPYDIPTEAFPFEIFKQAFAAVQSCVVHLQKVSLARRFALVPLGPPLLAYRSKCKAMLSAVDDAVELVVDRPYKAGDPIVVWCGPQPNTKLLTNYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSIQVYAGKEREAVLDMLPYLRLGYVSDPSEMQSVISSQGPVCPVSPCMEQAVLDQLADYFKTRLAGYPTTLAEDESMLTDGSLNPKKRVATQLVRLEKKMLHACLQATIDFINQLPDHSQSYSMSSIVTKKDGAGSTGSSSLRSLALIGAGVSGLLGFATTASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPEPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMGKDIVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN. 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02313 784 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 338 495 IPR036464 -
Seca10g02313 784 ProSiteProfiles Cytochrome c family profile. 567 674 IPR009056 GO:0009055|GO:0020037
Seca10g02313 784 Gene3D - 344 489 IPR036464 -
Seca10g02313 784 Pfam Rubisco LSMT substrate-binding 359 478 IPR015353 -
Seca10g02313 784 Gene3D - 544 739 IPR036909 GO:0009055|GO:0020037
Seca10g02313 784 FunFam Cytochrome c1, heme protein 544 739 - -
Seca10g02313 784 PRINTS Cytochrome C1 signature 573 592 IPR002326 GO:0009055|GO:0020037
Seca10g02313 784 PRINTS Cytochrome C1 signature 618 638 IPR002326 GO:0009055|GO:0020037
Seca10g02313 784 PRINTS Cytochrome C1 signature 689 700 IPR002326 GO:0009055|GO:0020037
Seca10g02313 784 PRINTS Cytochrome C1 signature 720 739 IPR002326 GO:0009055|GO:0020037
Seca10g02313 784 PRINTS Cytochrome C1 signature 739 754 IPR002326 GO:0009055|GO:0020037
Seca10g02313 784 PRINTS Cytochrome C1 signature 553 572 IPR002326 GO:0009055|GO:0020037
Seca10g02313 784 PRINTS Cytochrome C1 signature 700 719 IPR002326 GO:0009055|GO:0020037
Seca10g02313 784 PRINTS Cytochrome C1 signature 651 675 IPR002326 GO:0009055|GO:0020037
Seca10g02313 784 FunFam Rubisco methyltransferase family protein 344 491 - -
Seca10g02313 784 PANTHER CYTOCHROME C1 508 782 IPR002326 GO:0009055|GO:0020037
Seca10g02313 784 Gene3D - 740 783 - -
Seca10g02313 784 Pfam Cytochrome C1 family 555 771 IPR002326 GO:0009055|GO:0020037
Seca10g02313 784 SUPERFAMILY SET domain 76 346 IPR046341 -
Seca10g02313 784 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 739 783 IPR021157 -
Seca10g02313 784 SUPERFAMILY Cytochrome c 548 738 IPR036909 GO:0009055|GO:0020037
Seca10g02313 784 Gene3D set domain protein methyltransferase, domain 1 75 342 - -
Seca10g02313 784 FunFam Cytochrome c1, heme protein, mitochondrial 740 784 - -
Seca10g02313 784 FunFam Rubisco methyltransferase family protein 75 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02313 Seca-Chr10 27696330 27710017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02313 495 784 Chloroplast and Mitochondria Gene Families AT3G27240 86.644 5.49e-167 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02313 - - adu:107471590 830.476